Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05416 ATGGCTCTGTTACCATCATCTTCCTCTTCCTTCTTCAACTATCGATTCACCCACCAAGTGTTCCTCAGCTTTAGGGGCACTGATACTCGCTATGGTTTTACTGGTTATCTCTACAAAGCTCTCTGTGATAGAGGAATAGACACTTTCATTGATGACGAGGAGCTTCAAAAAGGAGAGGAAATCACACCATCACTTCTCAAGGCCATTGAAGGGTCTAGAATTGCCATCATTGTGCTCTCTAACAATTACACATTTTCATCATTTTGCTTAGACGAACTTTCTAAGATTCTTGACTACAGTAACGAAAAAGGTCGGTTGGTTTGGCCAGTTTTTTATAACGTGGAACCTTCTGATGTTCGAAGACTAAATGGGTCTTTTGAAGAAGCAATGACTAAGCATGAGGAGAGGTTCAAGGATGACAAGGAGAAACTGCAAAAATGGAAGATGGCTCTGCAAAAAGTGGCTAACTTGTCTGGTTGGCATGTCAAGCATGGCAAGGATACTTATGAACACGAGTTTGTCACAAACATTGTTGAAAAGGTGTCAGAAAAGATTAAACGTGTGGCTTTGCCTATTGCTGATTACCCGGTTGGATTGGAATCTCCAATGCTGAATGTAATTAAGCTTCTGGATGTCGGTTCGTCTGATGATAGATGTCACATGGTAGGGATTTATGGAATTGGTGGTATAGGTAAAACAACCCTTTCTCTAGCTGTTTATAATTTGGTTGCTGACCATTTTGAAGAATTGTGTTTTCTTGAAAAAGTTAGAGAAACTTCAGAGAAACATGGGTTACTACACATCCAAAAGACCATTCTTTCTGAAATAGTTGGAGAGAAGGAAATTAAATTAACAAGTGTCAAACAAGGAATTTCAATAATACAACAAAGACTTCAGAAAAAGAAAGTTCTTTTGATTCTAGATGATGTTGACAACCGAAAGCAATTAGAGGCTATTGCTGGAAGTCTTGAATGGTTTGGTCTTGGCAGTCGAGTCATTATCACAACGCGGGACAAACAACTACTTGCATGTCACGGGGTTAAAAGTACATATGAGGTAGAGGTGTTGAACAAGAAAGATGCTCTTGAATTTCTAAAATGGAAAGCTTTTAAAACTAATGAAGTTGATCCAAATTATGTGGACATTTTCAACCATGTTGTGGGTTATGCTTCTGGACTCCCGTTGGCCTTGGAAGTAATAGGTTCCCACTTGTGTGGAAAAAGCATAGAAGAATGGAAATCTGCATTGGATCAATATAAAAGGATTCCTAATGATGAGATCCAACAGATACTTCAAGTGAGCTTTATTGCTTTGGGGGAAGAAGTGAAAAGTGTTTTTCTCGACATTGCTTGTTGTTTGAAAGGATATGGATTGGTAGAAGTTGAGGAAATACTTTGTGCTCATTATGGTGGCTGCATGAAATATCACATTGGAGTGTTGATTGAAAAGTCACTCATAAAGAAGGGTTGGTTTCATAGTATGATCACAATGCATGACTTGATAGAGGATATGGGTAAAGAAATTGTCAGACAAGAATCACCAAAACACCCTGGGAAACGTAGTAGGTTGTGGTCTCCAACAGATATAGTTGAAGTTTTAGAAGAAAATACGAATGTTAGAATTTTAAGTTTTGACGAGTGTAAATATTTAACAACAATACCAGATTTGTCTGGTCTACTAAATGTAGAAGAATTTTCATTTAAAGGTTGTAAGAATTTAATTACAATTCATGATTCAGTTGGGTTGCTAGATAAACTTAAAGTCTTGAGTGCTGAAGAGTGTAGCAAGCTTAGAAATTTCCCACCTCTCAAGTTGACCTCTCTTGAAAGTCTCCTGCTTTCAGGTTGTAAGAGCCTCCTGAGCTTTCCAGAAATATTAGACGAGATGAAAAATATAACAAAGCTTGAATTGGAAAGGATTAACATAAAAGAATTTCCATTTTCATTTTGTAAGCTTAGTCAGCTTCGATCTTTAAGTCTGGAAAGCTTTGGAACTAGTTTTCAATTACCAAGTAGCATTTATATGATGTCAGAGCTGGCTAAGATTAAAATCTTTGACTACCGTGTGGGGGTGTGGCCACTGATAAAAGAGGATGAGGGTGAAGAAAAAGTAAGCTCAATGCTGTCTTTAAACTTACAACATCTTCAACTACGTTGGGTGTCAATTGATTTATTAGATGAATTTTTGGCAATAGGTCTCCAATGTTTTGCAAACATAAAAGAATTAGACCTATCATCCAATGAAATCACAATTATTCCTGAATGCATCAAAGAATGTCACTTTTTATGGAAGCTTGTCTTGGATTCTTGCTATAGACTTCAAGAAATCAGAGGGATTCCGCCAAACTTAAAATATTTATCTGCAAAGGGATGTGAATCATTGAATTCCTGGAGTAGAAGCATGTTACTGAATGAGGAAGTGCATGAGGCTGGAAACACCTTCTTTCGTTTGCCAAGCCCAAAGCAGCGAAGGATTCCAGAGTGGTTCGAGCACCAGAAAATGGGATTGTCAACTTCTTTCTCCTTCCGTAACAAGTTCCCTCACATTGCTCTCTCTCTTGCTCATATTCCTGATCGTGATGGTATGATATTGGATTGCGAACAATATTATAATGTAGTAATAATCATCAACGGCATGGAGTTTCCATGTTTGCAGGGAACAATATTTCAAGAAAAGGGTACGCTTCTTTTTCATATGGTAACGGTGGATGAAGTATTTTTAGAAAATGAGCGGAGCCATGCAAACAATCAATTCCCATTCCTTATAATATTCGGTGAATACTCCCGATACCAATCGATCCCTCTGTCGGAAGAGGAAGGTACAGATGTGAAGGGAAGAGTACTAATGGGAGGGTATGATCATAATATAGACGAAGCACTTTCTGAAAATGACTGGAACCATGTGGAGATTAAGGTAACTTTTGAAGAACCAAATCCAATCTTTATGGAAATTGGAATCCATGTAGTGAAAGAGAAAAATAGCATGGAGGATATTCGTTTATACGATCATATGTGGAATTTAAATAACATTGAAACCGTCGACCAATTATCACGTATCATTTTCATGGGGACAGAGCTCAATGCTGATATTGATATTGATGAGGTTGAAGAAAGATTACGGTCAATGTTGTCTTCAAACTTTGAATATTTTGACCTCTCAGGCTGCCACCTGTCACAAAAATGTTTCCCAATGGGTCTCCTTGGGTTCCCCAACTTGAAAGATTTGAACCTATCGAGGAATGACTTCGAATTTGTTCCTGATTGCTTCAAAGAATTCCAGTTTTTATGGAAGCTTCAATTGGATTATTGTAAAGAACTTGAAGATATTAGAGGGATACCCCCAAACTTAAGATACTTATCTACAAAAGGATGCACATCCTTTAGGTTCTGGTGTATAGACGAGTTACTGAAACAGGAACTGCATGAGGCTGGAAACACTTATTTTTGTTTGCCAACAGCAAGAATTCCAAAGTGGTTTGAGCACCGGAGAATGGGATTGTCAACTTCTTTCTGGTTTCGTAACAAGTTCCCACACATAGCTCTCTGTCTTGCTTTTTCTTGTCCACCAACATTGAGGAGTTTTCATGTAACTATGATCATCAATGACAGGGAATTTAAATATGAGGAAGACTTTGGATTCGATGGGCTGGGTAATACATTTCTTTTTCATGTGTTAATGGAAAAGTTCAAGTTTGACGAAGCACTTTTAGAACATGAGTGGAACCATGTGGAGATTAAGATACACTCTGTTTCCCCAATCGAGGTAGAAAGCGGAATCCATGTATTTAAAGAGAAAAGTAACTTAAAGGATGTCTGTTTCACTGATCCTCATAGATATGACTTCAACTTACTACCACTTCCAGAGAATGATGCAAGGAGAAAAAAACATAGACTTGAACTTGCAACCACATCAAGCGAATGA 3921 0.3787 MALLPSSSSSFFNYRFTHQVFLSFRGTDTRYGFTGYLYKALCDRGIDTFIDDEELQKGEEITPSLLKAIEGSRIAIIVLSNNYTFSSFCLDELSKILDYSNEKGRLVWPVFYNVEPSDVRRLNGSFEEAMTKHEERFKDDKEKLQKWKMALQKVANLSGWHVKHGKDTYEHEFVTNIVEKVSEKIKRVALPIADYPVGLESPMLNVIKLLDVGSSDDRCHMVGIYGIGGIGKTTLSLAVYNLVADHFEELCFLEKVRETSEKHGLLHIQKTILSEIVGEKEIKLTSVKQGISIIQQRLQKKKVLLILDDVDNRKQLEAIAGSLEWFGLGSRVIITTRDKQLLACHGVKSTYEVEVLNKKDALEFLKWKAFKTNEVDPNYVDIFNHVVGYASGLPLALEVIGSHLCGKSIEEWKSALDQYKRIPNDEIQQILQVSFIALGEEVKSVFLDIACCLKGYGLVEVEEILCAHYGGCMKYHIGVLIEKSLIKKGWFHSMITMHDLIEDMGKEIVRQESPKHPGKRSRLWSPTDIVEVLEENTNVRILSFDECKYLTTIPDLSGLLNVEEFSFKGCKNLITIHDSVGLLDKLKVLSAEECSKLRNFPPLKLTSLESLLLSGCKSLLSFPEILDEMKNITKLELERINIKEFPFSFCKLSQLRSLSLESFGTSFQLPSSIYMMSELAKIKIFDYRVGVWPLIKEDEGEEKVSSMLSLNLQHLQLRWVSIDLLDEFLAIGLQCFANIKELDLSSNEITIIPECIKECHFLWKLVLDSCYRLQEIRGIPPNLKYLSAKGCESLNSWSRSMLLNEEVHEAGNTFFRLPSPKQRRIPEWFEHQKMGLSTSFSFRNKFPHIALSLAHIPDRDGMILDCEQYYNVVIIINGMEFPCLQGTIFQEKGTLLFHMVTVDEVFLENERSHANNQFPFLIIFGEYSRYQSIPLSEEEGTDVKGRVLMGGYDHNIDEALSENDWNHVEIKVTFEEPNPIFMEIGIHVVKEKNSMEDIRLYDHMWNLNNIETVDQLSRIIFMGTELNADIDIDEVEERLRSMLSSNFEYFDLSGCHLSQKCFPMGLLGFPNLKDLNLSRNDFEFVPDCFKEFQFLWKLQLDYCKELEDIRGIPPNLRYLSTKGCTSFRFWCIDELLKQELHEAGNTYFCLPTARIPKWFEHRRMGLSTSFWFRNKFPHIALCLAFSCPPTLRSFHVTMIINDREFKYEEDFGFDGLGNTFLFHVLMEKFKFDEALLEHEWNHVEIKIHSVSPIEVESGIHVFKEKSNLKDVCFTDPHRYDFNLLPLPENDARRKKHRLELATTSSE. 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05416 1306 SMART till_3 17 157 IPR000157 GO:0007165
Seca9g05416 1306 ProSiteProfiles Leucine-rich repeat profile. 738 759 IPR001611 GO:0005515
Seca9g05416 1306 PRINTS Disease resistance protein signature 297 311 - -
Seca9g05416 1306 PRINTS Disease resistance protein signature 603 619 - -
Seca9g05416 1306 PRINTS Disease resistance protein signature 221 236 - -
Seca9g05416 1306 PRINTS Disease resistance protein signature 390 404 - -
Seca9g05416 1306 Gene3D - 182 349 IPR027417 -
Seca9g05416 1306 SUPERFAMILY L domain-like 497 798 - -
Seca9g05416 1306 SUPERFAMILY RNI-like 1041 1133 - -
Seca9g05416 1306 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 187 - -
Seca9g05416 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
Seca9g05416 1306 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Seca9g05416 1306 Gene3D - 15 181 IPR035897 -
Seca9g05416 1306 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 533 IPR044974 GO:0006952
Seca9g05416 1306 Pfam TIR domain 18 186 IPR000157 GO:0007165
Seca9g05416 1306 Gene3D Ribonuclease Inhibitor 622 809 IPR032675 -
Seca9g05416 1306 Gene3D Ribonuclease Inhibitor 991 1143 IPR032675 -
Seca9g05416 1306 Gene3D - 355 438 IPR042197 -
Seca9g05416 1306 Gene3D Ribonuclease Inhibitor 522 621 IPR032675 -
Seca9g05416 1306 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Seca9g05416 1306 Pfam NB-ARC domain 205 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05416 Seca-Chr9 160970178 160974997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05416 538 732 WRKY Transcription Factor Family AT4G12020 29.469 4.57e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05416 - - vra:106764825 894.034