Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05413 ATGCAAGTAGAAGAGAACCTGGGTTACTCTTTTGAGAAAACTAACAAAAATCAAGCTGGTTTAGATGCATGGCATAAAAACTTATCATCATTGATGGATCTGGTTAATGTAATTGACTCCATATTTCGTTCTGTTAAAAGAACTCCAATCACAAAGGAGGAGTTCCTGTATAAGATAATCATGAACAATTTGGACTTTGTCGAGATCGGAGAAGTTGAAGAACAGATTGAGATTCTGGAAAAGTTGGTGCCACACTGGATTTGCAAGAAGTTGGTTTGTTCAGGAGATATTATGTACTCGGATGGATATGAACACAAGTTCATTGCAAAGCTCGTTGAACAAGTCTCAAGAGAGATTAAACCGATTACTTTAGCCGTTGATAATTACCTAGTTGGACTAGAGACCAAAAAGCAGCATGTAATATCTCTTTTAGATGTTTGGTCAGATGATAAAGTCCACATGGTAGGAGTTCATGGAATTGGTGGTATAGGTAAAACAACCCATGCTCTAACAGTTTATAATTTGATTGCCCACCAATTTGAACGTTCATGCTTTCTTGAAAAAGTCAGAGAAAATTCAGAGAAGCATGAAGAATTACTACATCTACAAAAGAAACTTCTTTTTGAATTAACTGAAGAGAAGAAAATTGAGTTAACATCTGTCATGCAAGGAAATTCAATGATGCAACAAAGGTTACAACACAAGAAGATTCTTTTGATTCTAGATGATGTTGACAAGCGGGAGCAATTGGAGGCTCTTGCTAGAAAACAATGCTTTGGTCCTGGCAGTAGAGTTATTATCACCACACGGGACAAACACTTAACATATCATGAAGTTGAAAGTACATATGAAGTGGAGGAGCTGAACGAAAAAGATGCTTTTGAATTGCTTAAATGGAAAGCTTTTAAAACTGACAAAGTTTGTTCAAGTTATGTAGACATTTTAAACCGTGCGGTGACTTATGCTTCTGGCCTTCCGTTGGCTTTAGAAAGAAAATTGTTTTTCTTGACATTGCCTGTTGTTTTAAGATACCGCTTGGAAAAGGTTGAAGGAATACTTTGTGCTCATCACGATGGCCGCATAAAACACCACATTGGGGTGTTGGTTGAAAAATCACTCATTAAGATTGATGATCTTGATCGTGTGACAATGCATGACTTGTTAGAGGATATGGGTAAAGAAATTGTTCGACAAAAATCACCTGACCACCTTGGGAGACGTAGTAGGTTGTGGTCCCCAAAAGATATAATTGAAATTTTAGAAAAAAATACAGGAACTACTGAAATTCAAATGATATGTTGGAATTTTCGCTCAATGGAAGATCAAGTAGAATGGGATGGAGAGGCTTTCAAGAAAATGGAAAACCTTAAAACACTCATTATTAAAGAAGTTCATGAATATTAG 1404 0.3632 MQVEENLGYSFEKTNKNQAGLDAWHKNLSSLMDLVNVIDSIFRSVKRTPITKEEFLYKIIMNNLDFVEIGEVEEQIEILEKLVPHWICKKLVCSGDIMYSDGYEHKFIAKLVEQVSREIKPITLAVDNYLVGLETKKQHVISLLDVWSDDKVHMVGVHGIGGIGKTTHALTVYNLIAHQFERSCFLEKVRENSEKHEELLHLQKKLLFELTEEKKIELTSVMQGNSMMQQRLQHKKILLILDDVDKREQLEALARKQCFGPGSRVIITTRDKHLTYHEVESTYEVEELNEKDAFELLKWKAFKTDKVCSSYVDILNRAVTYASGLPLALERKLFFLTLPVVLRYRLEKVEGILCAHHDGRIKHHIGVLVEKSLIKIDDLDRVTMHDLLEDMGKEIVRQKSPDHLGRRSRLWSPKDIIEILEKNTGTTEIQMICWNFRSMEDQVEWDGEAFKKMENLKTLIIKEVHEY. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05413 467 Gene3D - 23 116 IPR038090 -
Seca9g05413 467 Pfam NB-ARC domain 134 330 IPR002182 GO:0043531
Seca9g05413 467 PRINTS Disease resistance protein signature 154 169 - -
Seca9g05413 467 PRINTS Disease resistance protein signature 451 467 - -
Seca9g05413 467 PRINTS Disease resistance protein signature 231 245 - -
Seca9g05413 467 PRINTS Disease resistance protein signature 322 336 - -
Seca9g05413 467 SUPERFAMILY "Winged helix" DNA-binding domain 330 421 IPR036390 -
Seca9g05413 467 Pfam DNA replication factor Cdt1 C-terminal domain 21 87 IPR032054 -
Seca9g05413 467 Gene3D - 117 283 IPR027417 -
Seca9g05413 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 90 462 IPR044974 GO:0006952
Seca9g05413 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05413 Seca-Chr9 160928975 160932678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05413 152 421 WRKY Transcription Factor Family AT5G45050 29.688 4.33e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05413 - - tpra:123907944 381.333