Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05401 ATGGCTCTGTTACCATCATCTTCCTCTTCCTTCTTCACCTATCGATTCTCCTACCAAGTGTTCCTCAGCTTTAGAGGCACTAATACTCGCTATGGTTTTACTGGTTATCTCTACAAAGCTCTTGATGACAAGGGAATCTGTACTTTCACTGATGAGGAGGAACTTCAAAAGGGGGAAGAAATCACACCATCACTTCTCAAGGCCATTGAAGGGTCTAGAATTGCTATCATTGTGCTCTCTAAGAACTATGCATCTTCATCATTTTGCTTGGATGAACTTTCCAAGATTCTTGATAGTATTAAGGAAAAGGGTCGATTGGTTTTGCCGGTATTTTATGACGTGGACCCTTCTGATGTACGAAAGCTGACAGGGACTTATGGAGAAGCAATGGCTAAGCATGAGGAAAGGTTCAAGGATGACATGGAGAAATTGCAAAAATGGAAGATGGCTCTTCATAAAATGGCTAATTTGTCCGGTTGGCATTTCAAGCATGGGGATGGATATGAACACAAGTTCATTGCAAAGATCGTTGAACAAGTCTCAAGAGAGATTAAACCTATAACTTTAGCAGTTGATAATTACCTAGTTGGACTGGAGACCAAAAAGCAGCATGTAATATCTCTTTTAGATGTTGGGTCTAATGATAGAGTCCACATGGTAGGAGTTCATGGAATTGGTGGTATAGGTAAAACAACCCTTGCTCTAACAGTTTATAATTTGATTGCCCACCAATTTGAACGTTCATGCTTTCTTGCAAAAGTTAGAGAAAATTCAGAGAAGCATGAATTACTACATCTACAAAAGAAACTTCTTTTTGAATTAACTGGAGAGAAGAAAATTGAGTTAACATGTGTCATGCAAGGAATTTCAATGATGCAACAAAGGTTACAACACAAGAAGATTCTTTTGATTCTAGATGATGTTGACGAGCAGGAGCAATTGGAGGCTCTTGCTGGAAGACAATGTTTTGGTCCTGGCAGTAGAGTTATTATCACCACGCGAGACAAACACTTGCTAACATGTCATGAGGTTGAAATAACTTATGCTTCTGGCCTTCCGTTGGCTTTGGGAGTTATAGGTTCTCACTTGTTTAAGAAAAGTTTAGAAGAATGGGAATCTGCATTAGATGGGTACAAAAGGATTCCAAATAAAGATATCCAAAATATTCTTAAATTAAGTTTTGATGCTTTGGGGGAAGAAGAGCAATGTGTTTTTCTCGACATTTCTTGTTGTTTCAAAGGATATCAACTAGTAGAGGTCAAAAAAATACTTTGTGCTCATCACGATGGCCGCATAGAACATCACATTGGAGTGTTGGTTGAAAAATCACTCATTAAGATTGATGTTCTTGATCGTGTGACAATGCATGACTTGATAGAGGATATGGGTAAAGAAATTGTCCGCAAGAATCACGGGACCACCCTGGAAAACGGAACTGCTGAAACTGAAATGATATGTTGGAATTCCTGGTCAAGCCTAGATCGAGTAGCTTGGGATGGAGAGGCTTTCAAGCAGATGAAAAAGCTTAAAACACTTATTATTAAAGATAAACTTAAAGTCTTAAATGCTGAAAATTGTAGCAACCTTAAGAATTTCCCACCTCTCAAGTTGACCTCTCTTCAAAGTCTTCGTCTTTCAGGTTGCAAGAGCCTCGTGAGCTTTCCAGAAATATTAGTCGAGATGAAAAATATAACAAAGCTTGAATTGAGAGAAGTTAACATAAAAGAATTTCAATTTTCATTTTGTAAGCTTAGTCAACTTCGATCTTTAAGCCTGGAAAAGTTTGGAAGTGGTTTTCAATTACCAAGTAGCATTTATAGGATGCCAAAACTAGCTGAGATTAAAATCATCAAGTCACGTGTGGGGGTGTTGCCATTCATAAAAGAGAGTGAAGAAAAAGTGAGCTCAATGCCAAACTTAAAACATCTTGAACTCCGCTGGATGTCAATTGATTTATGCAGCAGCAACCTGTTACATGAGTTTTTGGCAATAGGTCTCCAATGTTTTGCAAACATAGAAGAATTAGACCTATCAGGCAGTGGATTCACATTTATTCCTGAATGCATCAAAGAATGTCACTTTTTATGGAAGCTTGTCTTGAATTATTGCAAACAACTTCAAGAAATCAGAGGGATTCCTCCAAACATAAAATATTTATGTGCAAAGGGATGTGAATCCTTGAGTTCCTAG 2190 0.3795 MALLPSSSSSFFTYRFSYQVFLSFRGTNTRYGFTGYLYKALDDKGICTFTDEEELQKGEEITPSLLKAIEGSRIAIIVLSKNYASSSFCLDELSKILDSIKEKGRLVLPVFYDVDPSDVRKLTGTYGEAMAKHEERFKDDMEKLQKWKMALHKMANLSGWHFKHGDGYEHKFIAKIVEQVSREIKPITLAVDNYLVGLETKKQHVISLLDVGSNDRVHMVGVHGIGGIGKTTLALTVYNLIAHQFERSCFLAKVRENSEKHELLHLQKKLLFELTGEKKIELTCVMQGISMMQQRLQHKKILLILDDVDEQEQLEALAGRQCFGPGSRVIITTRDKHLLTCHEVEITYASGLPLALGVIGSHLFKKSLEEWESALDGYKRIPNKDIQNILKLSFDALGEEEQCVFLDISCCFKGYQLVEVKKILCAHHDGRIEHHIGVLVEKSLIKIDVLDRVTMHDLIEDMGKEIVRKNHGTTLENGTAETEMICWNSWSSLDRVAWDGEAFKQMKKLKTLIIKDKLKVLNAENCSNLKNFPPLKLTSLQSLRLSGCKSLVSFPEILVEMKNITKLELREVNIKEFQFSFCKLSQLRSLSLEKFGSGFQLPSSIYRMPKLAEIKIIKSRVGVLPFIKESEEKVSSMPNLKHLELRWMSIDLCSSNLLHEFLAIGLQCFANIEELDLSGSGFTFIPECIKECHFLWKLVLNYCKQLQEIRGIPPNIKYLCAKGCESLSS. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05401 729 Pfam NB-ARC domain 199 338 IPR002182 GO:0043531
Seca9g05401 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 408 IPR027417 -
Seca9g05401 729 SMART till_3 17 157 IPR000157 GO:0007165
Seca9g05401 729 SUPERFAMILY L domain-like 452 726 - -
Seca9g05401 729 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Seca9g05401 729 Pfam TIR domain 18 186 IPR000157 GO:0007165
Seca9g05401 729 Gene3D - 13 182 IPR035897 -
Seca9g05401 729 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 718 IPR044974 GO:0006952
Seca9g05401 729 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Seca9g05401 729 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Seca9g05401 729 PRINTS Disease resistance protein signature 295 309 - -
Seca9g05401 729 PRINTS Disease resistance protein signature 535 551 - -
Seca9g05401 729 PRINTS Disease resistance protein signature 219 234 - -
Seca9g05401 729 Gene3D Ribonuclease Inhibitor 376 729 IPR032675 -
Seca9g05401 729 Gene3D - 183 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05401 Seca-Chr9 160804216 160807325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05401 504 729 WRKY Transcription Factor Family AT5G45050 25.214 2.56e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05401 - - vra:106764825 684.485