Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05399 ATGCTTGGCAGTAGGAAGTGGGGTGGTAGCATTTCGCCGTTGACTTGCTGGATGGTCAAAAGGGAAAGGCAGACTACACAAATAAGGGGATTGTATTTGAAAACTATATTAAGCCAAGATGTTGTTTTCTATGATAAGGAAACAAACACAGGAGAGGTTGTGGGGAGAATGTCAGGTGACATGGTTCTCATACAAGATGCCAATTGCCATGGGTTAAAAGTAAGAGCTCAATTTTCGATTTGA 243 0.4156 MLGSRKWGGSISPLTCWMVKRERQTTQIRGLYLKTILSQDVVFYDKETNTGEVVGRMSGDMVLIQDANCHGLKVRAQFSI. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05399 80 Pfam ABC transporter transmembrane region 16 67 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g05399 80 SUPERFAMILY ABC transporter transmembrane region 16 69 IPR036640 GO:0005524|GO:0016020
Seca9g05399 80 Gene3D ABC transporter type 1, transmembrane domain 9 74 IPR036640 GO:0005524|GO:0016020
Seca9g05399 80 PANTHER ABC TRANSPORTER B FAMILY 10 72 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05399 Seca-Chr9 160797073 160799072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05399 1 67 Calmodulin-binding Proteins AT2G36910 41.791 1.05e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05399 K05658 - gmx:100799760 94.3597