Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05398 ATGGATCCGAAAGCATGTGAGATATCCGCAAAAGATGCTTCAGAATTCAAATGTGGGAAGATTCTCCACGCAGTTGATAAATCAATTGCATGCCCCACTCCAGAGAAGACCGAGCCGTTACACGTCAAGTCCAAAGTGGCAGAAACCCAGCTTCCAGAAAAATACAGGACCATTGCTGATTTGTTTAGTCATATGAGTTGTTCACTTAGATTGCTCCATCTGCGTAAAAAGTCTCCTACTTTTCAAAATATTTGCAGCCAGGTCGAAGTTCTTGCTAAGAGGAAATTCTCCTATGCTCATCTTGCGCAGATGAAGTATATACTTTCTGAAGGCATTCATATAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGCCGGATATGAAGATCACCTTGGTATTTGAGGTTGTAGAAGAACACTCGGAGCAATCTGCTGATATGGCTCTTCAGCAATATTTTAGTTCTAGGCTAATTGATTTTTACAATATGCATCCCGAGGCTACTGATATTCCAGAGGCCATACTACCAGAGCCCTTTAGCAGAAGAACTTGTAGCTTGATTTGTGAAGATTTTCCTGTTATTTCTTCAACAGCACTATCATCAACTTCCAATCAAATTGAATTGTTGCCTGAGAAATTCCATTTGTATCCATCATTTAGTAGACATTTTTCTGTGAAGATTGTTGCTGATCAGACAGAAAAGGTTCAGTGTGTTTCATCCACTAAACCTCATCTGTCATCATATACGTCTGATTTCCTAGATAACCAAGAAAGTGAAAGCACATGGCAGAAAGGATCTGCACCATTATCTGATCATGTGACCAATCTGAATACAGAAAGAGGGCAGCAGAAGGAATCATTTTCAATATGTTATCAACCTAGTGTTATTAATACACCAGTACATGTGATTGGACATTCTGTTAATTGTAGCAGTTCTGAAAGCCCTGATATGAAAATTGTCTCTTCTGGTGATAGTTTAATGACAGAGACACCTGCACAGTCAGCACCTAGGAGATTGTTGCCCGTTTCTGATGTTAAGCTTCAGGATACGACTGCCCAAAAGTCTACAACATGTTTCAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCATGGAAGGCAATGATGATTTGGACAATAGAATGGACATGTTAGAATATAGAAGAGCTCTGCCTGAAGTTGATAGCATCCCTGAACCTATTAGAGGATATTCTGAGGACTGCAATTATTTTGGTTCTGTTGCTCTGCCTCAGGAAGTAGAAGAGAACCTTGGTTACTCTTTTGAGAAAACTAACAAAAATCAAGCTGGTTTAGATGCATGGCATGAAAACTTATCATCATTGGTGGATCTGGTTAATGTAATTGATTCCATATTTCGTTCTGTTAAAAGAACTCCAATCACAAAAGAGGAGTTCCTGCAAAAGATAATCATGAACAGTTTGGACTTTGTTGAGATCGGAGAAGTTGAAGAACAGATTGAGATTCTGGAAAAGTTGGTGCCAGACTGGATTTGCAAGAAGTTGGTTTCTTCAGGAGATATTATGTACTGCGTCAAGAAAGTACCGGATTTGGACTCAGTTCGATCAAGGATTTCCAGCAATGTGGTTGTAGAGGTTGAGTGA 1629 0.3947 MDPKACEISAKDASEFKCGKILHAVDKSIACPTPEKTEPLHVKSKVAETQLPEKYRTIADLFSHMSCSLRLLHLRKKSPTFQNICSQVEVLAKRKFSYAHLAQMKYILSEGIHIDKVLVHDKKSLCMKPDMKITLVFEVVEEHSEQSADMALQQYFSSRLIDFYNMHPEATDIPEAILPEPFSRRTCSLICEDFPVISSTALSSTSNQIELLPEKFHLYPSFSRHFSVKIVADQTEKVQCVSSTKPHLSSYTSDFLDNQESESTWQKGSAPLSDHVTNLNTERGQQKESFSICYQPSVINTPVHVIGHSVNCSSSESPDMKIVSSGDSLMTETPAQSAPRRLLPVSDVKLQDTTAQKSTTCFKPAKRVLDFSLMEGNDDLDNRMDMLEYRRALPEVDSIPEPIRGYSEDCNYFGSVALPQEVEENLGYSFEKTNKNQAGLDAWHENLSSLVDLVNVIDSIFRSVKRTPITKEEFLQKIIMNSLDFVEIGEVEEQIEILEKLVPDWICKKLVSSGDIMYCVKKVPDLDSVRSRISSNVVVEVE. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05398 542 SUPERFAMILY "Winged helix" DNA-binding domain 41 182 IPR036390 -
Seca9g05398 542 CDD Cdt1_m 33 186 IPR014939 -
Seca9g05398 542 Pfam DNA replication factor CDT1 like 51 115 IPR014939 -
Seca9g05398 542 Gene3D - 442 540 IPR038090 -
Seca9g05398 542 PANTHER DNA REPLICATION FACTOR CDT1 41 534 IPR045173 GO:0003677|GO:0030174|GO:0071163
Seca9g05398 542 SMART CDT1_2 51 180 IPR014939 -
Seca9g05398 542 Pfam DNA replication factor Cdt1 C-terminal domain 441 506 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05398 Seca-Chr9 160759353 160764083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05398 50 533 Core DNA Replication Machinery Family AT2G31270 28.195 2.82e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05398 K10727 - gmx:102670055 646.351