Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05396 ATGGTAAAGAAACGCAAAGAAAAATTCTTCAAACTAAATGGAGGTATGTTGCTAGAACAAAAGTTTTCTTCTGGTGAAGTTAGTCTTGACAAAGCTAAAGTTTGTAGCTTAAAGGACTTAGAGAAGGCAACAGATCACTTTAACATGAACAGAGTACTTGGGAAGGGTGGTCAAGGTACTGTTTACAAAGGCATGCTATCAAATGGACAAATTGTTGCAGTTAAAAAGTTTAAGGTCGAAGGAAATGTTGAAGAATTCATTAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAATTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAGTTCATTCCAAATGGCAACCTCTATGATTATTTGCATGAACAAAGTGATGACTTACCAATGACATGGGATATGCGGGGGAAAGAAAATATCATTGCAGTTGCCAATCTTGCAAGTAGATGTTTAGAATTGAATGGGAAAAAACGGCCAACTATGAAAGAGGTCACATTGGAATTAGAAGGGATCCGAAAATTGGCCGAAAGAAAGTCTAATAATGCACAAGAAAACCATGAAGAACATGAGCTTGCTGAAATTGACGACTACCAACAATCTTGGGATGTGTATTCAATTTCAAATACAGGATTTACTCTGGGCAGTGAAACAACTACCTCAGAAGTCATGTCTATTCTTATCAAATAA 714 0.3557 MVKKRKEKFFKLNGGMLLEQKFSSGEVSLDKAKVCSLKDLEKATDHFNMNRVLGKGGQGTVYKGMLSNGQIVAVKKFKVEGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYDYLHEQSDDLPMTWDMRGKENIIAVANLASRCLELNGKKRPTMKEVTLELEGIRKLAERKSNNAQENHEEHELAEIDDYQQSWDVYSISNTGFTLGSETTTSEVMSILIK. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05396 237 SUPERFAMILY Protein kinase-like (PK-like) 30 143 IPR011009 -
Seca9g05396 237 Coils Coil 181 201 - -
Seca9g05396 237 Pfam Protein tyrosine and serine/threonine kinase 48 141 IPR001245 GO:0004672|GO:0006468
Seca9g05396 237 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 147 191 IPR045274 GO:0007166
Seca9g05396 237 FunFam Wall-associated receptor kinase 2 17 120 - -
Seca9g05396 237 ProSiteProfiles Protein kinase domain profile. 47 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05396 237 Gene3D Transferase(Phosphotransferase) domain 1 123 209 - -
Seca9g05396 237 Gene3D Phosphorylase Kinase; domain 1 15 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05396 Seca-Chr9 160649916 160651042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05396 146 225 Receptor kinase-like Gene Family AT1G16260 37.209 2.50e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca9g05396 PK_Tyr_Ser-Thr 9.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05396 - - ahf:112741505 305.834