Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05391 ATGGAGAACCAAGACGAAGGCGATGAAGAGCTTGCACCGCCACCAATGGGCAAGTTGGGTTCCTACGGTGGTGAGGTGATGTTGGTGATTCCCGGGGAAGAGTCAGCTGCAGAAGAGACCATGCTCCTTTGGGGTATTCAGCAGCCTACCCTTTCCAAACCCAACGCCTTTGTTTCTCAGTCTTCCTTGCAACTCTGCCTTGACTCTTGCGGCCACTCTCTCTCAATTCTTCAGTCTCCTTCTTCCTTGGGCACGCCTGGAGTAACTGGATCAGTGATGTGGGACAGTGGAGTTGTATTGGGGAAGTTTCTAGAGCATTCTGTTGACTCAGGAATGCTTGTTCTTCAGGGCAAGAAGACTGTTGAATTGGGATCTGGTTGTGGATTGGTCGGTTGCATTGCAGCTCTTTTGGGCGGTGAAGTCATTCTTACTGACCTGCCTGATAGGCTAAGGTTACTTAGAAAGAACATTGAAACCAACATGAAACATGTCTCTCTACGAGGTTCCATAACAGCAACTGAACTCACATGGGGAGAAGATCCTGACCGAGAACTCATTGACCCCACTCCTGATTTTGTGCTAGGATCTGATGTTGTGTACAGTGAGGAGGCTGTTGTGGATCTGCTAGAGACACTTGGGCAGCTCTCAGGGCCTAATACAACAATATTTTTGGCTGGGGAACTTCGAAATGATGCCATTCTTGAGTACTTCTTAGAAGCTGCAATGAATGATTTCAAAATTGGCCGTGTGGATCAAACACTGTGGCATCCAGATTATCGCAGCAATAGAGCCAGCAACATGTCATCATCACCAACCCCTCCTCAAGTCATAACCTGCAGAGCTGCAGTGGCATGGGGAGCAGGAGAGCCATTGGTAATGGAAGAAGTGGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTTTCTGCACCTCTCTCTGTCGCAGCGATCTTACCGCTTGGGAATCTCACGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGGCTGGGTGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGGCATGCAGACCGTGCACATCAGGAAAAAGTAACATATGTCAAGTTTTGGGATTGGAAAGAAAAGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTATTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTCAAAGTCAGCCCACATGTACCTCTTGAGAAAATATGCCTTCTGAGCTGTGGGGTTGCTGCAGGTCTAGGTGCAGCATGGAATGTTGCTGATGTGTCAGAAGGATCAACAGTGGTGATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCCAAACTAAGGGGTGCATCTCGAATAATTGGTGTGGACAACAATCCGCAGAAGTGTGAAAAGGCTAAAGCTTTTGGGATTACAGAAGTTGTTGATCCGAATTCCTACAAAGAACCTATTGCTCAAGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGCACTATTACTAATGGGAAGAACGTTGAAAGGGTCTCTATTTGGAGGATGGAAACCTAAATCTGATCTGCCTTCATTAGTTGAGAAGTATGTGAACAAGGAAATCCAGATTGATGACTATATAACACACAATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGAAGGAAGGAAAATGTTTGCGTTGTGTTATCCACATGTCATGA 1932 0.455 MENQDEGDEELAPPPMGKLGSYGGEVMLVIPGEESAAEETMLLWGIQQPTLSKPNAFVSQSSLQLCLDSCGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHSVDSGMLVLQGKKTVELGSGCGLVGCIAALLGGEVILTDLPDRLRLLRKNIETNMKHVSLRGSITATELTWGEDPDRELIDPTPDFVLGSDVVYSEEAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFKIGRVDQTLWHPDYRSNRASNMSSSPTPPQVITCRAAVAWGAGEPLVMEEVEVSPPQPMEIRIKVFCTSLCRSDLTAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMACRPCTSGKSNICQVLGLERKGLMHSDQKTRFSVKGKPIYHYCAVSSFSEYTVVHSGCAVKVSPHVPLEKICLLSCGVAAGLGAAWNVADVSEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGITEVVDPNSYKEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYALLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMS. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05391 643 Pfam Alcohol dehydrogenase GroES-like domain 304 427 IPR013154 -
Seca9g05391 643 FunFam Uncharacterized protein 586 637 - -
Seca9g05391 643 FunFam S-(hydroxymethyl)glutathione dehydrogenase 447 585 - -
Seca9g05391 643 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 334 348 IPR002328 GO:0008270|GO:0016491
Seca9g05391 643 SUPERFAMILY GroES-like 272 452 IPR011032 -
Seca9g05391 643 FunFam Alcohol dehydrogenase 6 282 461 - -
Seca9g05391 643 CDD alcohol_DH_plants 277 641 - -
Seca9g05391 643 Pfam Lysine methyltransferase 89 237 IPR019410 -
Seca9g05391 643 Pfam Zinc-binding dehydrogenase 471 592 IPR013149 -
Seca9g05391 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 432 606 IPR036291 -
Seca9g05391 643 Gene3D Vaccinia Virus protein VP39 72 270 IPR029063 -
Seca9g05391 643 PANTHER ALCOHOL DEHYDROGENASE 275 640 - -
Seca9g05391 643 Gene3D - 447 585 - -
Seca9g05391 643 Gene3D - 282 637 - -
Seca9g05391 643 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 234 IPR029063 -
Seca9g05391 643 SUPERFAMILY GroES-like 590 641 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05391 Seca-Chr9 160530663 160551469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05391 305 379 Monolignol Biosynthesis Gene Families AT2G21730 39.241 6.15e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05391 K00001 - gmx:100819938 708.368