Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05390 ATGACAACACCAACCTCATCATGTGTGAAATTTCAATTTCATTTTGTTCTAACTATGTTCCTCTTTTTGTACCTTGCAAATTCTCAGTCTCAGTTGTATGATCAGGAACATAGAGTCCTAATGAATATAAAGCAATATCTGCAAAACCCATCTTTTCTTAGTCATTGGACTCCATCAAGTTCCTCTCACTGTTCTTGGCCTGAGATCACCTGCACCACTGGCTCTATCACTGGACTCACTCTCTCCAATGTCAACATAACCCAAACAATACCACCCTTCATCTGTGATCTCAAAAACCTCACACATGTTGACTTCAGCATCAACTTCATCCCTGGTGATTTTCCAACACCTCTCTATAACTGTTCCAAGCTGGAGTACCTAGACCTCTCCATGAACAACTTTGATGGCAAGATTCCTGATGACATTGACCATTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCCACCAATTTCTATGGTGATATTCCTGCTAGTATTGGGAAGTTAAAGCAATTGAGGCAACTCAAACTTCAATATTGCTTATTCAATGGTTCTGTTCCTGCTGAGATTGGTACCTTGTCCAATCTTGAGTACTTGGATTTGTCCTCTAACAGCATGTTCCCTTCTTGGAAATTGCCAAGGAACTTGACCCAGTTGAACAAATTAAAGGTCTTTTATGTGTATGGCTGCAACTTGGTTGGGGAAATCCCTGAAAACATTGGAGATATGGTGGCTTTGGAGAAGTTGGACTTGTCAAACAATAGTTTAACTGGAGGAATTCCCAGTGGTTTGTTCATGTTAAAGAATCTTAGCATATTGTATCTTTACCAAAACAGACTTTCTGGGGAGATACCTGGTGTGGTTGAAGCATTGAATTTGACTGCCCTTGATCTTGCAGAGAACAATCTTATAGGAAAAATACCAGAAGATTTTGGAAAGCTCCAAAAGTTAACATGGTTGAGTTTGTCTCTCAATACCTTATCAGGGGAGATACCTGAAAGCTTAGGCCATCTTCCATCTCTCACTGATTTTCGTGTATTTTACAACAAGTTATCAGGTACTCTTCCTCCTGATTTTGGCCGCTACTCAAAGCTTCAAACTTTTCACATTTCATCTAATAGTCTTACTGGAAAATTACCAGAGAATTTATGTTATTATGGTGAGTTACTTAATTTGACAGTTTATGACAACAATCTAAGTGGTGAGTTGCCAGAATCACTAGGAAATTGTAGTAGCTTATTGGAACTGAAAATTTACAATAATGAGTTTTCTGGTACTATTCCTAGTGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTAAGCCATAATAAGTTCACTGGTGTGCTTCCTGAAAAATTGTCTTGGAATGTTTCACGGTTTGAGATTGGTTACAATCAGTTTTCTGGTAGAATTCCATCTGGGGTATCTTCATGGACTAATGTGGTTGTGTTTGATGCTAGCAAGAATAACTTCAATGGAAGTATTCCACAAGAGTTAACATCTCTTCCAAAGTTAACAGCTCTGAAGCTTGATCAGAACCAGCTCACTGGTCCACTTCCATCAGATATAATATCATGGAATTCACTAGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCAGATGAAATTGGGTTGTTACCTGTCCTTAATGTACTTGACCTTTCAGAAAATGATTTCTCTGGCAAAATCCCTTCTAAACTTCCTAGGGTCACCAATCTCAATCTATCCTCTAATCATTTGACAGGGAAGATTCCAAGTGAATTTGAAAATTCTGTGTATGCTAGCAGCTTTTTAGGCAATTCTGGCCTCTGTGCTGATACCCCAATAATGAACCTTACCTTATGCAATTCTGGCCCTCAAAGAACAAGTAAGGGCTCATCATGGTCTATTGGTTTGGTTATAAGTTTAGTAGCAGCAGCCTTCTTATTGGCCTTTATTACATCACTCTTGTTGATCAGATTTCATAGAAAAAGAAAGCAAGGATTGGATAACTCATGGAAACTCATTTCCTTTCAGAGGCTGAGTTTCACAGAATCAAGCATTGTTTCATCAATGACAGAACAAAATATCATTGGAAGTGGTGGATATGGTACAGTATACCGTGTTGATGTTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGAGCAAAAGCTAGAGAATTCATTTCGTGCAGAAGTTAAGATATTGAGCAATATTAGGCATAACAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGATGATTCTATGCTCCTTGTCTATGAGTATTTGGAAAACCATAGCCTAGATATGTGGCTGCACATGAAGAATAAGTCATCAGCTATGTCAAGTTCAGTTCAGCATGTGGTCTTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGGGCTGCACAAGGTTTGTGCTATATGCACCATGATTGTTCACCACCAATTGTTCATCGAGATGTGAAAACAAGTAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCTAAAATGTTAATCAAGCCAGGGGAAGTTAACACTATGTCAGCTGTGATTGGCTCATTTGGCTATATTGCTCCAGAATATGTTCAAACAACAAGAATCACTGAAAAGATTGATGTGTTTAGCTTTGGGGTTGTCCTATTGGAATTAACAACCGGTAAAGAAGCAAATTATGGAGACCAACACTCATCTTTAGCAGAGTGGGCATGGCGTCACGTTCTGTTAGGAAGCAATGTAGAAGAATTGCTAGACAAAGATGTCATGGAAGGTAGTTACTTGGATGAAATGTGCATGGTTTTCAAACTTGGGGTAATGTGTACTGCAACACTGCCTGCTAGTAGGCCTTCCATGAAGGAGGTCCTACAAATATTGCTCCGTTGTGAAGAACCATTTGCTTATAGAGAGAAGAAAGTTGTCCACAACTATGATGATGTTCCCCTTCTTAAAAGGGACACTAGTTTAGATGTTGATGATATCTGA 3027 0.3859 MTTPTSSCVKFQFHFVLTMFLFLYLANSQSQLYDQEHRVLMNIKQYLQNPSFLSHWTPSSSSHCSWPEITCTTGSITGLTLSNVNITQTIPPFICDLKNLTHVDFSINFIPGDFPTPLYNCSKLEYLDLSMNNFDGKIPDDIDHLGANLQYLNLGSTNFYGDIPASIGKLKQLRQLKLQYCLFNGSVPAEIGTLSNLEYLDLSSNSMFPSWKLPRNLTQLNKLKVFYVYGCNLVGEIPENIGDMVALEKLDLSNNSLTGGIPSGLFMLKNLSILYLYQNRLSGEIPGVVEALNLTALDLAENNLIGKIPEDFGKLQKLTWLSLSLNTLSGEIPESLGHLPSLTDFRVFYNKLSGTLPPDFGRYSKLQTFHISSNSLTGKLPENLCYYGELLNLTVYDNNLSGELPESLGNCSSLLELKIYNNEFSGTIPSGLWTSFNLSNFMVSHNKFTGVLPEKLSWNVSRFEIGYNQFSGRIPSGVSSWTNVVVFDASKNNFNGSIPQELTSLPKLTALKLDQNQLTGPLPSDIISWNSLVTLNLSQNQLSGQIPDEIGLLPVLNVLDLSENDFSGKIPSKLPRVTNLNLSSNHLTGKIPSEFENSVYASSFLGNSGLCADTPIMNLTLCNSGPQRTSKGSSWSIGLVISLVAAAFLLAFITSLLLIRFHRKRKQGLDNSWKLISFQRLSFTESSIVSSMTEQNIIGSGGYGTVYRVDVDGLGYVAVKKIWNNRKLEQKLENSFRAEVKILSNIRHNNIVKLLCCISNDDSMLLVYEYLENHSLDMWLHMKNKSSAMSSSVQHVVFDWPKRLKIAIGAAQGLCYMHHDCSPPIVHRDVKTSNILLDAQFNAKVADFGLAKMLIKPGEVNTMSAVIGSFGYIAPEYVQTTRITEKIDVFSFGVVLLELTTGKEANYGDQHSSLAEWAWRHVLLGSNVEELLDKDVMEGSYLDEMCMVFKLGVMCTATLPASRPSMKEVLQILLRCEEPFAYREKKVVHNYDDVPLLKRDTSLDVDDI. 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05390 1008 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Seca9g05390 1008 Gene3D Ribonuclease Inhibitor 389 628 IPR032675 -
Seca9g05390 1008 Gene3D Transferase(Phosphotransferase) domain 1 771 994 - -
Seca9g05390 1008 FunFam Receptor-like protein kinase HSL1 672 770 - -
Seca9g05390 1008 Pfam Protein kinase domain 694 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05390 1008 Gene3D Phosphorylase Kinase; domain 1 674 770 - -
Seca9g05390 1008 SMART serkin_6 692 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05390 1008 FunFam Receptor-like protein kinase HSL1 isoform A 298 622 - -
Seca9g05390 1008 SMART LRR_typ_2 194 220 IPR003591 -
Seca9g05390 1008 SMART LRR_typ_2 244 268 IPR003591 -
Seca9g05390 1008 SMART LRR_typ_2 315 339 IPR003591 -
Seca9g05390 1008 SMART LRR_typ_2 574 597 IPR003591 -
Seca9g05390 1008 SMART LRR_typ_2 505 529 IPR003591 -
Seca9g05390 1008 FunFam Receptor-like protein kinase HSL1 isoform A 33 185 - -
Seca9g05390 1008 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 293 974 - -
Seca9g05390 1008 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Seca9g05390 1008 Pfam Leucine Rich Repeat 247 264 IPR001611 GO:0005515
Seca9g05390 1008 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Seca9g05390 1008 SUPERFAMILY L domain-like 43 379 - -
Seca9g05390 1008 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Seca9g05390 1008 SUPERFAMILY RNI-like 297 597 - -
Seca9g05390 1008 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Seca9g05390 1008 ProSiteProfiles Protein kinase domain profile. 692 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05390 1008 FunFam Kinase family with leucine-rich repeat domain-containing protein 771 990 - -
Seca9g05390 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Seca9g05390 1008 SUPERFAMILY Protein kinase-like (PK-like) 686 974 IPR011009 -
Seca9g05390 1008 ProSiteProfiles Leucine-rich repeat profile. 531 553 IPR001611 GO:0005515
Seca9g05390 1008 Gene3D Ribonuclease Inhibitor 188 290 IPR032675 -
Seca9g05390 1008 Gene3D Ribonuclease Inhibitor 291 388 IPR032675 -
Seca9g05390 1008 Gene3D Ribonuclease Inhibitor 33 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05390 Seca-Chr9 160522373 160526229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05390 30 1007 Receptor kinase-like Gene Family AT5G25930 51.919 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca9g05390 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05390 - - gmx:100813894 1580.46