Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05383 ATGAACTTAAGCTTTTGCTATGTGGTCTTTTTGTTTTTGTCACTGAACATGGTCTTGTGTGTTGAGATTAAGGATTTCTATCCAGAAGAAAGAGATGCTTTGTTGCTCATAAGGGATTCTTTAAATTCTTCTCTCAATTTGCATGGGAATTGGACAGGACCTCCTTGTATAGAAAATCAGAGTAGATGGTTTGGTATAACATGTTCCAATTGGCATGTTGTTCACATTGTCCTTCAAGGAGTTAATCTTAATGGTTATTTACCTCCTACATCCTTTCAAAATATAACTTTCTTGAGCCAACTTGACTTCAGAAACAATGCACTTTTTGGGCCACTACCAAACCTCACTAGTTTGGTGTTTTTAGAACAAGTCTTATTCTCATCTAATTATGTGTCAGGGTCAATTCCTGTGGAGTATGTTGAACTTCCCAGGCTACAAGTCTTGGAGCTGCAAGAAAACTACTTAGATAGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATACAATCATCTGGTAGGGTCAATTCCTGAAACTTCTGTGCTTCAAAGGTTCCCAAAGAGTTCTTTTGATAATAATTCAGATCTTTGTGGTAAGCCATTGGATAAGTCATGTCCTGTTGAACCTCCTGCCCCATCTCCAGCTCCATTTCCTGTTGTTGTTCCTCCAAGCCCTGCAGTGGAAAAAATTAAGAAGAGACTTCAAGTATGGGTTATTGCTTTGATTGCTACTTCAGCTGGACTCTTTCTTTTTATGATCATTATTATTGCTTTCTTGTTTTCTAGAAAACAAGCAAGTGGAAAAGCAAAAAGAAGAAATGATTCAGCTGGGTATGTTTTTGGAGCATGGGCAAAGAAGATGGTGTCTTATCCAGGGAAGAGTGATGATTCTGAAAGATTAGGCAGATTGGAATTTTCCAACAAGAAATTTCCAGTTTTTGACATGGATGATTTATTAAGGGCATCAGCAGAAGTGCTAGGAAGAGGGAATTTAGGTGTTACATACAAAGCAACACTTGAAACTGGTACTGTTGTTGCAGTGAAGAGACTTAGCTACATGAATGAATTGAGCAGGAAGGAATTTCTCCATCAGATGCAAATGCTAGGTCAGATAAAGCATGAAAATCTAGTAGAAATTGTCTCTTTTTATTATTCAGAAGAGCAAAAGCTGGTCATATATGAACTAGTCCCTGATGGCACTTTGTTTGAGCTCCTACATGGTAGGGTGGAGGAGTTGGAAGAACACCTCTTGATTGGACCACAAGACTGGCTATTATCAAAGACATAG 1302 0.3825 MNLSFCYVVFLFLSLNMVLCVEIKDFYPEERDALLLIRDSLNSSLNLHGNWTGPPCIENQSRWFGITCSNWHVVHIVLQGVNLNGYLPPTSFQNITFLSQLDFRNNALFGPLPNLTSLVFLEQVLFSSNYVSGSIPVEYVELPRLQVLELQENYLDSQIPPFDQPSLTSFNVSYNHLVGSIPETSVLQRFPKSSFDNNSDLCGKPLDKSCPVEPPAPSPAPFPVVVPPSPAVEKIKKRLQVWVIALIATSAGLFLFMIIIIAFLFSRKQASGKAKRRNDSAGYVFGAWAKKMVSYPGKSDDSERLGRLEFSNKKFPVFDMDDLLRASAEVLGRGNLGVTYKATLETGTVVAVKRLSYMNELSRKEFLHQMQMLGQIKHENLVEIVSFYYSEEQKLVIYELVPDGTLFELLHGRVEELEEHLLIGPQDWLLSKT. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05383 433 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 413 IPR046959 -
Seca9g05383 433 Pfam Protein kinase domain 328 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05383 433 SUPERFAMILY Protein kinase-like (PK-like) 328 415 IPR011009 -
Seca9g05383 433 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Seca9g05383 433 Gene3D Phosphorylase Kinase; domain 1 294 400 - -
Seca9g05383 433 ProSiteProfiles Protein kinase domain profile. 325 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05383 433 Gene3D Ribonuclease Inhibitor 27 212 IPR032675 -
Seca9g05383 433 SUPERFAMILY L domain-like 28 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05383 Seca-Chr9 160410371 160412897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05383 30 412 Receptor kinase-like Gene Family AT1G48480 35.335 1.44e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca9g05383 Pkinase 1.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05383 - - gmx:100788386 592.038