Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05373 ATGAGAAACTCTGAAGCAAGTCAAGTGGCTATGGAGATAGAAGCAAGCAAGCCTTCAGGGAATGGGGTAACCCTGCCAGGGTTGAGTCCTCTGAGTGAGACACTTTGGAGGGAGAAGGCACAAACAGAGTTCATTGGAGATGTCTCAGCAAGGCTCACATGGAAGGATCTGACTGTGATGGTAACTCTTAGCAATGGAGAGACTCAAAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCTGGTACCTTCACTGCTCTTATGGGTCCTTCAGGTTCAGGAAAATCTACACTTCTTGATGCCCTTTCTAGTCGCCTAGCAGCAAATGCTTTTCTTTCAGGCACCATACTCCTTAATGGTCGCAAAGCCAAACTCTCTTTTGGCACTGCAGCATATGTGACACAAGATGACAACTTAATTGGTACCTTAACTGTACGAGAAACAATTTCATATTCAGCTCGTTTGCGTTTGCCTGATAAGATGTCAAGGTCTGATAAGAGAGCTCTTGTTGAGAGCACCATTGTAGCAATGGGTCTTCAGGATTGTGCTGACACAGTGATTGGGAATTGGCACTTGCGTGGGATAAGTGGTGGAGAAAAGAGAAGGGTTAGCATTGCTTTGGAAATCTTGATGAGGCCAAGATTACTTTTCCTTGATGAACCAACGAGTGGTCTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACACTACGTGCCTTGGCAAGGGATGGAAGAACAGTGATAGCTTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGCTATTTGACCAACTGTACTTGCTTTCTGGTGGTAAAACTGTTTATTTTGGCCAAGCTTCAGATGCATATGAGTTCTTTGCACAAGCTGGCTTTCCATGCCCTGCTCTGAGGAACCCCTCTGATCATTTCCTTAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACCCTTAAAGGGTCCATGAAACTAAGGTTTGAGGGAAGTGAGGATCCCCTGGATAAGATCACTACTGCTGAAGCTATCAGAACTCTCATTGACTACTACCGCACTTCTCAGCACTCTTATGCTGCAAGACAAAAAGTGGATGATATATCCAGAGTTAAGGGAACAGTGCTTGAAGCAGGAGGAAGTGAGGCTAGTTTCTTGATGCAATCTTACACCTTAACCAAGCGCTCATTCATTAACATGTCAAGGGACTTTGGTTATTACTGGCTTAGGCTTGTAATTTACATTGTGGTCACTATCTGCATTGGAACCATTTACTTGAACGTGGGGACAAGCTACAACTCAATTCTGGCTAGGGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGATATGAAGGTTTTCCAACGGGAGAGGCTTAATGGGCACTATGGTGTCACTGCATTTGTGATCAGTAACACATTATCTGCAATGCCATTCCTTATATTGATCACCTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACGTGTTCTTTGTGTTGTGTCTTTATGCTAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTCCCCAACTTCCTCATGGGGATCATAATTGGAGCAGGGATTCAGGGCATATTCATGTTGGTCTCTGGATACTTTAGGCTCCCACATGATATCCCAAAGCCAGTCTGGCGCTATCCAATGTCATACATCAGTTTCCACTTCTGGGCATTACAGGGACAATACCAGAATGATCTTAAAGGATTGATATTTGACAACCAGACACCTGACCTTCCAAAGATACCAGGAGAATACATCCTTGAGAATGTGTTCCAGATTGATGTCAGCAGATCAAAGTGGGTAGATTTAAGTGTAATCTTAAGCATGATTGTCATCTACCGCATTTTCTTCTTCTTCATGATCAAAATCAATGAGGATGTGACCCCATGGGTGAGAGGGTATCTAGCTAGGAGAAGAATGCAGCAGAAGAGTGGAGCCCAGAATACTACTATTGCACCTGATGTCCTCACTCAGTCCCCATCTCTGAGAAACTACATTTCCACTCAAACAAGAAATGGTACTTCCAGAAACGACAATGAATCTTCTTGA 2139 0.4353 MRNSEASQVAMEIEASKPSGNGVTLPGLSPLSETLWREKAQTEFIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASDAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSEDPLDKITTAEAIRTLIDYYRTSQHSYAARQKVDDISRVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLIFDNQTPDLPKIPGEYILENVFQIDVSRSKWVDLSVILSMIVIYRIFFFFMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRNYISTQTRNGTSRNDNESS. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05373 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 288 IPR027417 -
Seca9g05373 712 Pfam ABC transporter 74 223 IPR003439 GO:0005524
Seca9g05373 712 CDD ABCG_EPDR 49 277 - -
Seca9g05373 712 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Seca9g05373 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 295 IPR003439 GO:0005524
Seca9g05373 712 FunFam ABC transporter G family member 11 46 289 - -
Seca9g05373 712 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 41 673 - -
Seca9g05373 712 SMART AAA_5 81 252 IPR003593 GO:0016887
Seca9g05373 712 Gene3D - 46 290 IPR027417 -
Seca9g05373 712 Pfam ABC-2 type transporter 385 591 IPR013525 GO:0016020|GO:0140359
Seca9g05373 712 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05373 Seca-Chr9 160088590 160096022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05373 82 256 Calmodulin-binding Proteins AT2G36910 33.871 1.53e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05373 K05681 - gmx:100803731 1305.04