Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05327 ATGACACCAGCAGGTGAAGTTGCTAAGAAAATGGATAAAGAAGATAATGTAAATAATGGTGATGATGTGCATGATATAGAAAATGATGGTCGAGTTGATGGAAATGAGGAAATTGGAAGGTATTGGTCAGAGTTTTCTGAAAGAAACATGACGTACACAGAGCCACTTCTTGTGAAGAGGATTAACACTACCTCCCAGATTGCTATAGTTGGTTCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGGTATTTGATAATGAAATATTTAATCAGGACTGGAGGTCCAGGAAGAAAGTTCAGATATTCCAGTATGTGGTACTTAAGTGGGGATTCGCCCTTCTTATTGGATTAGGAACTGGACTGGTTGGCTTCTTTAATAATATTGCGGTTGAGAACATAGCTGGCTCCAAGCTGATTTTGACAGCCAGTCTCATGTCTAAACACAGATATCTTGAGGCTTTTCTACTATATGCTGGTCTCAATATAGCTTTAGCAGCAGCAGCAGCAGCACTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGCATTCCAGAGGTTAAAGCATATCTCAATGGCATAGATGCTCACTCTATACTGGCTCCAAGAACCCTTTTTGTAAAGATTGTTGGTTCCATCTTTGGAGTTTCTGCTGGATTAGTGGTGGGCAAAGAAGGACCAATGGTTCATACAGGTGCATGCATAGCTTCTTTGTTGGGGCAGGGTGGATCTCGCAAATATCATTTGACTTGCACTTGGCTCAGGTATTTCAAAAATGATCGAGACCGGCGAGACATGATTACTTGTGGTGCGGCTGCTGGTGTTGCTGCTGCCTTTCGTGCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCACTTCTCTGGAGGACATTTTTCACTACAGCAGTAGTTGCTATTGTTTTAAGAGCTGGGATTCAGATTTGTTCCACTGGGAAATGTGGGCTATTCGGGGAAGGAGGTCTGATATTATATGATGTCAGTTCAGCCAAGGTAACATATAGTGGTGGTGATATAGTAGCAGTCCTAGTCTTGGGAACCATTGCTGGAGTTCTTGGAAGCATATATAATTTCCTTGTGGATAAGGTTGTTCGTACATATAGCATCATCAATGAAAAAGGTGCAGCTTTCAAAATATCTCTTGTTGTCACAATTTCTCTTTTGACATCGTGTTGTTATTATTTCCTACCTTGGGTTGCAAGCTGTATCCCCTGTCCTACTGATGGGACAGTGAACTGCCCCTCTGTTGATGAGTCAGGAGAATACAAAATGTTTCAATGTCCACCAGGCCACTACAATGATCTTGCTTCCCTCTTTCTAAACACCAATGATGATGCTATTCGTAATTTATTCAGTCCCAAGATAACCAAAGAGTTCCATATTTCAAGTCTGTTTATCTTCTTTGCTACTGTTTACTCTCTTGGGATAATCACTTATGGTATTGCTGTTCCATCCGGGCTTTTTATTCCTGTGATTCTTGCTGGGGCTGCCTATGGCCGTCTTCTTGGGAGGCTCTTTGAACCAATCACCAAACTTGACATGGGACTCTTTGCCCTCCTTGGAGCTGCCTCCTTCCTTGGTGGCACTATGAGAATGACAGTCTCCCTTTGTGTTATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAATCTCAAAAACTATGGCTGACTGCTTCAACAAGGGTGTCTATGATCAAATACTGAAGATCAAAGGACTTCCTTATTTGGAAGCCTATGCAGAACCTTACATGAGGAATATAGTTACACGTGATGTTGTCTCAGGTCCATTAATGACATTTTATGGCATTGAAAGGGTGGGGAATATATTACATGTTTTGAATACTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTTGTGGATGCACCTGAGTTATGTGGGCTTGTACTGAGGTCTCATTTACTAGTTTTACTAAAGGACAAGAACTTTACAAGAGACAGGGTGTTCGCGGATCAGAGTATCTTAGAAAGAATTTCTAAGTTGGATTTTGGGAAGGCAGGATCAGGAAAGGGAGTCAAACTAGATGATCTAGATATCGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCTCCATACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCCATTCTTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAATTGTTGGGATTCTAACACGCCATGATTTTATGCCTGAGCATGTTTTGGGACTTTACCCCGATATCAAGCATCACAAATGGCACTGA 2385 0.4252 MTPAGEVAKKMDKEDNVNNGDDVHDIENDGRVDGNEEIGRYWSEFSERNMTYTEPLLVKRINTTSQIAIVGSNLCPIESLDYEVFDNEIFNQDWRSRKKVQIFQYVVLKWGFALLIGLGTGLVGFFNNIAVENIAGSKLILTASLMSKHRYLEAFLLYAGLNIALAAAAAALCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPRTLFVKIVGSIFGVSAGLVVGKEGPMVHTGACIASLLGQGGSRKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQICSTGKCGLFGEGGLILYDVSSAKVTYSGGDIVAVLVLGTIAGVLGSIYNFLVDKVVRTYSIINEKGAAFKISLVVTISLLTSCCYYFLPWVASCIPCPTDGTVNCPSVDESGEYKMFQCPPGHYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIFFATVYSLGIITYGIAVPSGLFIPVILAGAAYGRLLGRLFEPITKLDMGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTMADCFNKGVYDQILKIKGLPYLEAYAEPYMRNIVTRDVVSGPLMTFYGIERVGNILHVLNTTGHNGFPVIDEPPFVDAPELCGLVLRSHLLVLLKDKNFTRDRVFADQSILERISKLDFGKAGSGKGVKLDDLDIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLYPDIKHHKWH. 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05327 794 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 38 782 - -
Seca9g05327 794 Gene3D - 600 782 IPR046342 -
Seca9g05327 794 Gene3D Clc chloride channel 101 599 - -
Seca9g05327 794 MobiDBLite consensus disorder prediction 1 29 - -
Seca9g05327 794 MobiDBLite consensus disorder prediction 7 29 - -
Seca9g05327 794 FunFam Chloride channel ClC3 101 439 - -
Seca9g05327 794 SUPERFAMILY CBS-domain pair 603 777 IPR046342 -
Seca9g05327 794 SUPERFAMILY Clc chloride channel 88 601 IPR014743 -
Seca9g05327 794 CDD CBS_pair_voltage-gated_CLC_euk_bac 613 779 - -
Seca9g05327 794 Pfam Voltage gated chloride channel 166 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 548 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 209 228 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 498 518 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 530 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 178 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 586 600 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 PRINTS Chloride channel signature 273 292 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca9g05327 794 Pfam CBS domain 730 776 IPR000644 -
Seca9g05327 794 ProSiteProfiles CBS domain profile. 726 788 IPR000644 -
Seca9g05327 794 PRINTS Plant CLC chloride channel signature 326 333 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g05327 794 PRINTS Plant CLC chloride channel signature 83 91 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g05327 794 PRINTS Plant CLC chloride channel signature 294 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g05327 794 PRINTS Plant CLC chloride channel signature 308 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca9g05327 794 PRINTS Plant CLC chloride channel signature 450 466 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05327 Seca-Chr9 158773369 158785952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05327 15 792 Ion Channels AT5G49890 70.370 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05327 K05016 - gmx:100809070 1266.14