Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05290 ATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCGTTTTGGACCTATATTCAACAAGTTGGTGAAGGAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAGTCGAAGTCAATGCCATACACCCATATAAAACGCAATATATATCTCGCTAAGAAGGTCAAGAGACGGTTTGAGGATGATGGCATATTTTGTTCCTGCACAAGTTCACCTGGATCTACTGATGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCATTTCAGCAACGTCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAGTGTGGTTCTGGAATTGTTGCGGATGAAGATATCAAGGTTGGGGAGTTTGTTATTGAATATGTTGGAGAAGGAATGTTATTGTTATCTCTTTCTGCAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACACCGTGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGTTGACTACTAATTGTTTTATTCACATGAGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGCGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGGGTGTAGGCGTAAGCTGGGTGTGCGACCTAACAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCTTATCAGGTTTGTCAAAATGGAGGCTTGCAAATTGGAAGTTCTCGTGTTGTTGACAAATCGAAGTGCTTACACAATTGCATTGGTGAAATTATTAGGATAAAACAACTTGGCAATATGAGGTTTGGAATTATTAAATGGTTTGATAAATATTCCCGAAAACACTCGATCATGTTTGAGGACGGTTGTGTTGAAATATATGACATGTCAAAAGAAGATTGGGAACTAGTGAGATGA 1104 0.3913 MPAMKKNSEQTRFGPIFNKLVKELGEPVDFELPDWFNKSKSMPYTHIKRNIYLAKKVKRRFEDDGIFCSCTSSPGSTDVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQQRPVKKMKLVQTEKCGSGIVADEDIKVGEFVIEYVGEGMLLLSLSAVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWLTTNCFIHMRIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAGCRRKLGVRPNKPKMSSDAALKLVAYQVCQNGGLQIGSSRVVDKSKCLHNCIGEIIRIKQLGNMRFGIIKWFDKYSRKHSIMFEDGCVEIYDMSKEDWELVR. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05290 367 Gene3D SET domain 34 288 IPR046341 -
Seca9g05290 367 SMART set_7 114 256 IPR001214 GO:0005515
Seca9g05290 367 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0042054
Seca9g05290 367 ProSiteProfiles SET domain profile. 114 250 IPR001214 GO:0005515
Seca9g05290 367 PANTHER SET DOMAIN PROTEINS 29 287 - -
Seca9g05290 367 Pfam SET domain 125 249 IPR001214 GO:0005515
Seca9g05290 367 FunFam Histone-lysine N-methyltransferase 30 288 - -
Seca9g05290 367 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0042054
Seca9g05290 367 SUPERFAMILY SET domain 27 262 IPR046341 -
Seca9g05290 367 SMART PostSET_3 256 272 IPR003616 -
Seca9g05290 367 CDD SET_ASHR3-like 115 272 - -
Seca9g05290 367 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 310 IPR025787 -
Seca9g05290 367 ProSiteProfiles Post-SET domain profile. 256 272 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05290 Seca-Chr9 157977262 157988256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05290 87 268 C2H2 Transcription Factor Family AT2G23740 32.323 7.74e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g05290 SET 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05290 - - gmx:100808183 648.277