Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05274 ATGTGGGATGTTCCAAGACGTGATTCTAAAGGGGTTGCGACGGTCAACATGATACTCATTGATGAGGAGAGCAATAAGATTCAAGCAAGCATATTTCAGCTAGAGCTAATATCTAAATTTGCATCTTGCATCAATGAGGGGAATTGTTATAACATTGAAAATTTGAGCATTGGAGAAAATTCTGGAAATTATAAATCAACTAAACATCCATACCGCATCACTTTTGGATTGGAAACAAAGGTTACACCATGTGAAGCTGTCATCCCTGATTATACATTTGACTTTGCTCCTTTTGATAAAATTCTATCAGAGCAAAATCGTATGGGACATTTAATTGATATCATTGGAGCAATAGCTGAAATTAGTCAACTACAACAATTCAACTTTGAAGGAGAAAGTGGAAAAAGACTAGAGATTAAATTGGCTGATGAAAGAGATAACTTTGTTAGATGCACACTATTTGGAGACTCTGTTGTAGATGTTTTTAATTCTGTATCTGGTGGTAGTGATGACACAAAGATCATGGTTATGCAACTAGCACGAATTAAACCTTTCAAAGGACAAAACTACTTGGCTACATCATGGAATACAATGAAAATATTCATCAATCCAAATATTCCAGAAGTAGAAAAGTTTAAGAATATGTTAGGGGTATCCCTGCCAAACTTGACTCCATCACAATCCAACACTCAGTTATCAAGTTGGACTTCATCTTATACAGATGAACTTGGAAACCCTGCTCTTAGACGAACATTAATAGAAATTCGAGATGCAAAACAGTCTGGAAGAGTAACTACCCTGGCAACTATTCACAAAATAGTTAAAACTGAGAATTGGTTCTACAAGTCATGTAACATCTGTTGGAAGACAGTACGAGACAAGGATGGTTTCTTATTATGTACCAAATGTCACAAGACTCCATCTAAAGTTATCCCAAGATTCCGGACGCATTTAATGGTGATGATCAAACTGGAAGTGCTTGCTTTGTCCTCTTTGAGAAACAAGGTGTTGAACTATTCAACAAGACAACAAATGAATTGCGTGAAAAGATGGTCAAGGATGGAAATGACTCTACATTCCCACCTATTTTGGAAACATTACTGGGAAAAAAGTTTGTTTTCATGA 1125 0.36 MWDVPRRDSKGVATVNMILIDEESNKIQASIFQLELISKFASCINEGNCYNIENLSIGENSGNYKSTKHPYRITFGLETKVTPCEAVIPDYTFDFAPFDKILSEQNRMGHLIDIIGAIAEISQLQQFNFEGESGKRLEIKLADERDNFVRCTLFGDSVVDVFNSVSGGSDDTKIMVMQLARIKPFKGQNYLATSWNTMKIFINPNIPEVEKFKNMLGVSLPNLTPSQSNTQLSSWTSSYTDELGNPALRRTLIEIRDAKQSGRVTTLATIHKIVKTENWFYKSCNICWKTVRDKDGFLLCTKCHKTPSKVIPRFRTHLMVMIKLEVLALSSLRNKVLNYSTRQQMNCVKRWSRMEMTLHSHLFWKHYWEKSLFS. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05274 374 Pfam Domain of unknown function DUF223 17 105 IPR003871 -
Seca9g05274 374 Gene3D - 87 219 IPR012340 -
Seca9g05274 374 SUPERFAMILY Nucleic acid-binding proteins 93 224 IPR012340 -
Seca9g05274 374 CDD RPA1_DBD_B_like 113 216 - -
Seca9g05274 374 Gene3D - 1 86 IPR012340 -
Seca9g05274 374 Pfam Replication protein A OB domain 108 198 IPR031657 -
Seca9g05274 374 SUPERFAMILY Nucleic acid-binding proteins 7 87 IPR012340 -
Seca9g05274 374 Gene3D - 236 326 IPR012340 -
Seca9g05274 374 SUPERFAMILY Nucleic acid-binding proteins 251 365 IPR012340 -
Seca9g05274 374 CDD RPA1_DBD_A_like 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05274 Seca-Chr9 157699638 157702976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05274 7 314 Core DNA Replication Machinery Family AT5G08020 23.620 2.18e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05274 - - ahf:112711209 164.081