Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05240 ATGAATGAAAAATCTCATGTGCAATGTCATACATGGAGTTATGGTGAAGCACTGGCCAAGCATGTGGAGAGATTCAGAAATAACAAGGAAAAGTTCAAGGATAACATGGAGAGGTTGCAAAAATGGAAGATGGCTCTTAACCAAGTAGCTAACTTGTCCGGCATGCACTTCAAACTCGGGAATGAATATGAACATGAGTTTATTTGGAAGATAGTTGAAGAGGTCTTCAACAAGATTAACCGCACTCCTTTACATGTTGCGGATTACCTTGTTGGACTAGAGTCTCAAGTGCTTAAAGTAAAATCACTTCTGGATGTTGGATCTGGTGATGGAGTCCACATGGTAGGGATTTATGGAATTGGTGGAATGGGCAAAACAACACTAGCACGAGCACTTTATAATTTGATTGCTGACCAATTTGAAGGTTTCTGTTTTCTTCATAATGTGAGAGAAAATTCAACTAAACATGGCTTAGAACATCTCCAAGAGAAGCTCCTTGCAAAAACAGTTGGATTTAACATTAAATTAGGGGATGTCAGTGAAGGAATTCCAATAATAAAGCAAAGGTTGCACTGGAAGAAGGTTCTTTTGATTCTTGATGATGTTGACAAATTGAGGCAATTGCAAGATAGGATTGGAGGACCAAATTGGTTTGGTCATGGCAGCAGAATCATCATTATCACTCGAGACCAACATTTGCTAGCAAGTCATGGTGTTAAAAAAATGTATGAGGTATTTGGGTTAAATGAGGAAGAAGCTCTTGAATTGTTGAAGTGGAATGCTTTTAAAAATGACAAAGTTGATCCAAGTTACAAGGGCATTTTAAAAAGTGCAGTAACTTATGCTTGTGGCCTTCCATTGGCATTGGAAGTAATAGGCTCCAACTTGTATGGAAAAAGTATAGGAGAATGGAAATCAACATTGGATCGGTATGAAAGGATTCCTAATAAAGAGATCCAAAAGGTACTTAAAGTAACCTTTGATGATTTGGAGGAAGATGAGCAAAGTGTTTTTCTTAGTACTAGCTCGGCGGGCCTAGTCCATATTGCCACTGCTATTGAAAACATACTTCATGCTCATCATGGTGACCGTGTGAAACATCACATTGGAGTATTGGTTGAAAAATCTCTCATAAAGATTAGTTGCAAAGGTACCATTACATCACATGACTTGATAGAGGACATGGGTAAATAG 1194 0.3819 MNEKSHVQCHTWSYGEALAKHVERFRNNKEKFKDNMERLQKWKMALNQVANLSGMHFKLGNEYEHEFIWKIVEEVFNKINRTPLHVADYLVGLESQVLKVKSLLDVGSGDGVHMVGIYGIGGMGKTTLARALYNLIADQFEGFCFLHNVRENSTKHGLEHLQEKLLAKTVGFNIKLGDVSEGIPIIKQRLHWKKVLLILDDVDKLRQLQDRIGGPNWFGHGSRIIIITRDQHLLASHGVKKMYEVFGLNEEEALELLKWNAFKNDKVDPSYKGILKSAVTYACGLPLALEVIGSNLYGKSIGEWKSTLDRYERIPNKEIQKVLKVTFDDLEEDEQSVFLSTSSAGLVHIATAIENILHAHHGDRVKHHIGVLVEKSLIKISCKGTITSHDLIEDMGK. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05240 397 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 397 IPR044974 GO:0006952
Seca9g05240 397 Gene3D - 77 242 IPR027417 -
Seca9g05240 397 Gene3D - 247 331 IPR042197 -
Seca9g05240 397 PRINTS Disease resistance protein signature 114 129 - -
Seca9g05240 397 PRINTS Disease resistance protein signature 189 203 - -
Seca9g05240 397 PRINTS Disease resistance protein signature 282 296 - -
Seca9g05240 397 SUPERFAMILY "Winged helix" DNA-binding domain 317 396 IPR036390 -
Seca9g05240 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 339 IPR027417 -
Seca9g05240 397 SMART AAA_5 111 248 IPR003593 GO:0016887
Seca9g05240 397 Coils Coil 22 42 - -
Seca9g05240 397 Gene3D - 2 76 IPR035897 -
Seca9g05240 397 Pfam NB-ARC domain 95 319 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05240 Seca-Chr9 157041692 157045488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05240 91 397 WRKY Transcription Factor Family AT5G45050 30.547 4.89e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05240 - - gmx:100814962 506.523