Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05235 ATGGTTCCACCACTCTGTGCTAATGGTTGCGGCTCTGCAAACAACAACCTCTGTTCCAAATGTTTCAAAGAAAACATCATCAAATCAAATAAAGAAGGTGTCGTGTACTGTAAAAGCAAGATCTTGAAGGGTGAAACCTCTGTTCTTGAGTCATCTCCTTCTCATAAGCCATCTGCTTCTGAGAGCTCTATTCCTGATGTTTGTTCTGCTATTACACTCACTGATCAATCTACAAGCTCAAAGAACAAGACAAATAGGTGCAAGAACTGCAACAAAAAAATTGGACTAACTGGGTTCAAGTGCTATTGTGGAGATGTGTTTTGTGGGATTCATAGGTACCCAGAAGTGCACGCATGTAAAGTGGATTTCAAAACAATTGGTCGCCAAGCTTTGACCAAACAAAATCCTAAATGTATCCATGATAAGTTAGAATACAGGATCTAG 444 0.3964 MVPPLCANGCGSANNNLCSKCFKENIIKSNKEGVVYCKSKILKGETSVLESSPSHKPSASESSIPDVCSAITLTDQSTSSKNKTNRCKNCNKKIGLTGFKCYCGDVFCGIHRYPEVHACKVDFKTIGRQALTKQNPKCIHDKLEYRI. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05235 147 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 144 - -
Seca9g05235 147 Pfam AN1-like Zinc finger 87 122 IPR000058 GO:0008270
Seca9g05235 147 SUPERFAMILY AN1-like Zinc finger 74 140 IPR035896 -
Seca9g05235 147 Gene3D - 1 64 - -
Seca9g05235 147 SMART AN1_Zf_4 87 124 IPR000058 GO:0008270
Seca9g05235 147 Gene3D - 72 132 IPR035896 -
Seca9g05235 147 ProSiteProfiles Zinc finger AN1-type profile. 81 127 IPR000058 GO:0008270
Seca9g05235 147 FunFam Zinc finger AN1-type containing 6 59 142 - -
Seca9g05235 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05235 Seca-Chr9 156919710 156920153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05235 64 144 C2H2 Transcription Factor Family AT3G52800 45.679 2.24e-24 90.9