Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05234 ATGGTTCCACCACTTTGTGCTAATGGTTGTGGCTTTTACGGTTCTGCTGAAAACAAGAACCTTTGTTCAAAGTGCTATGTAGATTATCTCAAACAGAACACCCCTGTTCTTGAGTCATCTCCTTCTGATAAAGAGGATCCTGTTGTTACTGATGTTTGTGCTTCTGTTTCTGCTATTACACTCAACGACTCTACCACCATAAAGAACACCACAAATAGATGCAAGTGTTGCAACAAAAAAGTTGGACTCACAGGATTCAAGTGTCGTTGTGGAGATGTGTTTTGTGGAAGACATAGGTACCCAGAAATGCACCCATGTAATGTAGATTTGAAAAAGATTGGTAGTGAAACTTTGGCTAAACAAAATCCCAAATGTATTGGTGATAAGTTAGAAGACAGAATCTAG 405 0.3901 MVPPLCANGCGFYGSAENKNLCSKCYVDYLKQNTPVLESSPSDKEDPVVTDVCASVSAITLNDSTTIKNTTNRCKCCNKKVGLTGFKCRCGDVFCGRHRYPEMHPCNVDLKKIGSETLAKQNPKCIGDKLEDRI. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05234 134 FunFam Zinc finger AN1-type containing 6 49 129 - -
Seca9g05234 134 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 34 - -
Seca9g05234 134 Pfam AN1-like Zinc finger 74 107 IPR000058 GO:0008270
Seca9g05234 134 Pfam A20-like zinc finger 5 26 IPR002653 GO:0003677|GO:0008270
Seca9g05234 134 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Seca9g05234 134 Gene3D - 50 127 IPR035896 -
Seca9g05234 134 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 131 - -
Seca9g05234 134 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Seca9g05234 134 ProSiteProfiles Zinc finger AN1-type profile. 68 114 IPR000058 GO:0008270
Seca9g05234 134 SUPERFAMILY AN1-like Zinc finger 63 128 IPR035896 -
Seca9g05234 134 Gene3D - 1 48 - -
Seca9g05234 134 SMART AN1_Zf_4 74 111 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05234 Seca-Chr9 156907400 156907804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05234 5 131 C2H2 Transcription Factor Family AT3G52800 37.975 1.01e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05234 - - gmx:102666624 170.244