Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05224 ATGGAGGAAAGAGATATTTTTGGTTCTGGGCATGCTGTTAAGGTTAACGAGGCCCCAGAGAGCTTCCACGTAGGACTAAATTCCATGCAGTTTCCCGGGCCCACGACTCAGTCTCCGGCTCCGGCGCCGGTGACTGCTCCGGCGAGTGAAGCGGCGGCGACGCCTGGTAGTACGGATGGAAAGAAGAAGAGAGGTAGGCCTAGGAAGTATGGACCGGACGGCAAGGTGGCGCTGTCGCCGATGCCGATATCGGCGTCAATTCCGTTGACCGGAGATTTCTCAGGCTGGAAAAAGGGTAGAGGGAAACCATTTGAGTCAATCAAGAAGTCTTATAAGTTTTATGATTCTGAAGGTTCAGCAGGACCAGCTACCTATTTTATAGGTGATGGAATTGCATACTCAGTTGGTTCCAATTTTACAGCTCACATACTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGCCATGCTATATGTATTCTCTCTGCAAATGGCACAATTTCAAATGTTACACTTCGTCAACCGACATCTTCTGGTGGTACTTTGACATATGAGGGGAGGTTTGAGATTCTTTCCTTGTCTGGTTCATTTATGCCAACTGAGAATGGATTAACAAGGAGCAGATCCGGTGGAATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGGGTTATGGGGGGTGGACTGGCTGGTCTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTGGTAGGCAGTTTTCTTCCAGGTCACCAGCTGGAGCATAAAGCCAAGAAGCAGAGGGTGGAACATATATCAATGGTTTCCCCTACACATGCTAATCCTATTTCTACTGAAGAAATAAACATCAGTCTTGGTGGAATAAAGCCTATCATGACACCTGCTGGCTTTCAAGTTGGCAACATTGCTTCTTATAACAATGGTCATGGCTCTAGGAACTCATCTATTGATGATGATGCTCATTTTCATGAAAAGGATTCTAACCCTACCCAATCAGATGCTGGAGTTGCATGCTAA 1038 0.4701 MEERDIFGSGHAVKVNEAPESFHVGLNSMQFPGPTTQSPAPAPVTAPASEAAATPGSTDGKKKRGRPRKYGPDGKVALSPMPISASIPLTGDFSGWKKGRGKPFESIKKSYKFYDSEGSAGPATYFIGDGIAYSVGSNFTAHILTVNAGEDVTMKIMSFSQQGCHAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKAKKQRVEHISMVSPTHANPISTEEINISLGGIKPIMTPAGFQVGNIASYNNGHGSRNSSIDDDAHFHEKDSNPTQSDAGVAC. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05224 345 ProSiteProfiles PPC domain profile profile. 136 278 IPR005175 -
Seca9g05224 345 MobiDBLite consensus disorder prediction 321 335 - -
Seca9g05224 345 CDD DUF296 142 254 IPR005175 -
Seca9g05224 345 MobiDBLite consensus disorder prediction 315 345 - -
Seca9g05224 345 FunFam AT-hook motif nuclear-localized protein 1-like 141 272 - -
Seca9g05224 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 310 IPR039605 GO:0003680
Seca9g05224 345 Gene3D - 140 275 - -
Seca9g05224 345 MobiDBLite consensus disorder prediction 24 77 - -
Seca9g05224 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 254 IPR005175 -
Seca9g05224 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05224 Seca-Chr9 156714591 156720803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05224 51 267 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 61.842 4.00e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05224 - - gmx:102667678 471.855