Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05213 ATGGGGTGTTCAGTACTTGCTCTTCTTATCTTTTCTCTACTGGGTTTGGTCTTGAACCCAACATGTGTTTGTGGGAATGATGAGCTTAGAGCACTCTTGGACTTGAAAGCCACTTTGGATCCAGATGGTCAGTTTCTTTCCTCTTGGACCATGAATGGCAACCCATGTAGTGGTTCTTTTGAAGGGGTGGCTTGCAATGAGAAGGGTCAGGTAGCAAATGTTTCTTTGCAGGGAAAAGGTCTCTCTGGCAAGCTATCACCAGCCATTGCTGGGTTGAAACACTTAACAGGACTTTACTTGCATTACAACTCTTTGTATGGAGAGATACCTAGAGAAATTGCTAACTTGACTGAGCTTAGTGATTTGTACTTGAATGTGAATCATTTGTCTGGTGAAATCCCTCATGAGATCGGCAAGATGGAGAATCTACAAGAGAAATCTCCTTTAGAAGATGCTTTATGCAACCATAACTACGATTTTGAACAACCTGATTTTTCTGATTTAATGCAAGAGCTTTGGGTAGAAATAATGTTGTTTGGTGGTTCAAACTTGGGAGTGTACTTATTTTTCCTTTTTACTTGCTATGTAGTTTTGCAGCTTTGTTATAATCAGTTAACAGGAAGCATACCAACACAGCTTGGTGAATTGAAAAAGCTTAGTGTTCTTGCTCTGCAGTCAAACCAGTTAGCTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGGTTAGATCTGAGCTCTAATCATCTCTTTGGTTCCATTCCCACTAGACTAGCTGATGTTCCTTCATTGCAAGTTCTGGATGTTCACAACAATACTCTCTCTGGGAATGTACCCCCTGCTCTGAAGAGACTAGATGAAGGATTTGTGTATGAATACAATTTGGGGTTATGTGGAGTGGGATTTTCATCCTTGAAAGCTTGCAATGCTTCAGATCATGTGAATCCCAACAGGCCTGAACCTTATGGAGCAGGAGTTACTGGTCTTTCAAGGGATATCCCAGAAACTGCAAATATAAAGTTGCCTTGCAATACAACTCAATGCCAAAATTCATCAAAATCCAAAAGAGCAACATCTATTACTGTTGGCACAATTGTGGTTACAATTGCATTATCAGCAATTGCTATTCTGACCTTCACCATGTATCGTCGGCGAAAGCAAAAGCTTGGAAGTGCATTTGACATCACTGAAAGCCGTCTAAGTACAGATCAAACCAAGGGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACGCCAATGGATGGGATCCATTGGCTGATAGCAGGAATTTTAATGGGGATAGGGAAGATATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAATCAGCTACTCAGTATTTCTCAGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTGTTGTTGCTGTTAAGAGCATCAGTAAAACAAGTTGCAAATCAGATGAAGCTGAATTTTTGAAAGGGTTGAACATTTTGACCTCACTGAGAAATGAGAATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGAAGAGGTGAATGCTTCCTGGTTTATGATTTTGTTTCTAATGGAAATCTGACGCGCTACCTTGATGTAAAGGAAGGAGATGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTAAAAGGAATTGCTAAAGGTATAGCATATTTGCATGCATACAAAGCAAACAAACCCGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGCACAACCCATTGCTTTCAGATTCAGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTCAAAGGCAGTGCAGCAAAAGGTTACCTAGCTCCAGAATACACCACCACTGGCCGGTTCACAGAGAAAAGTGATGTTTATGCTTTTGGGGTGCTTCTCTTCCAAATCCTCACAGGGAAGCAGAAGATCAGTAGCTCAATGCGCCAAGCTGCAGAATCCTTCAGATTCCAAGAATTCATCGACTCGAATCTCCATGGCAGGTTCTTCGAATATGAGGCAGCTAAACTAGCAAGAATGGCTTTACTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACCATGGAAGCCATTGTTCAGGAACTAAACAATTGTAGTAGCTGTCTGTGA 2205 0.415 MGCSVLALLIFSLLGLVLNPTCVCGNDELRALLDLKATLDPDGQFLSSWTMNGNPCSGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPHEIGKMENLQEKSPLEDALCNHNYDFEQPDFSDLMQELWVEIMLFGGSNLGVYLFFLFTCYVVLQLCYNQLTGSIPTQLGELKKLSVLALQSNQLAGAIPASLGDLGMLMRLDLSSNHLFGSIPTRLADVPSLQVLDVHNNTLSGNVPPALKRLDEGFVYEYNLGLCGVGFSSLKACNASDHVNPNRPEPYGAGVTGLSRDIPETANIKLPCNTTQCQNSSKSKRATSITVGTIVVTIALSAIAILTFTMYRRRKQKLGSAFDITESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDREDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVSNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAYKANKPALVHQNISAEKVLIDQRHNPLLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQKISSSMRQAAESFRFQEFIDSNLHGRFFEYEAAKLARMALLCSHDSPFERPTMEAIVQELNNCSSCL. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05213 734 Gene3D Phosphorylase Kinase; domain 1 433 540 - -
Seca9g05213 734 Gene3D Transferase(Phosphotransferase) domain 1 541 733 - -
Seca9g05213 734 Pfam Protein tyrosine and serine/threonine kinase 466 727 IPR001245 GO:0004672|GO:0006468
Seca9g05213 734 ProSiteProfiles Protein kinase domain profile. 462 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05213 734 Gene3D Ribonuclease Inhibitor 25 148 IPR032675 -
Seca9g05213 734 FunFam Nuclear pore complex protein NUP107 25 151 - -
Seca9g05213 734 Gene3D Ribonuclease Inhibitor 191 304 IPR032675 -
Seca9g05213 734 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 74 729 - -
Seca9g05213 734 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 190 285 - -
Seca9g05213 734 FunFam Protein NSP-INTERACTING KINASE 2 541 731 - -
Seca9g05213 734 SUPERFAMILY Protein kinase-like (PK-like) 441 728 IPR011009 -
Seca9g05213 734 FunFam Protein NSP-INTERACTING KINASE 2 433 540 - -
Seca9g05213 734 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca9g05213 734 SUPERFAMILY L domain-like 22 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05213 Seca-Chr9 156442701 156446744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05213 3 575 Miscellaneous Gene Families AT4G22730 50.772 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca9g05213 PK_Tyr_Ser-Thr 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05213 - - gmx:100806056 1157.9