Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca9g05180 | ATGCCTTCTCTTCCTCTCTCCAACGGCGCAGCTCTCAGCGAGAGCCCCAAAGACAAGACAAAGAAGAAGAAGGAGAAGAAGAACCAGCCCCTAAACGACGCCGTTTCAGAGCTGGAAGTTCTAGGCTCTAAGAGCAAGAGCAAAAAGAACTCGAAGGAGAGCAAGAAGCGGAAGAAGGGTTCGGATGAGGAAGAGGAGCAGGAGAAGAGTGAGACTAGCTCCGACCTCGTGGAGCCCACAGAGGAAGGCTCGGGAATGAAGGAGAGTAAGAAGAAGAAGAAGAAAGCAAGGGTTGAGGAAGAACACGAGATGGAAGTAGAAAAAGAAGAAGAGGTTGAGAAGGAGAATCCGAATGCGATTTCCAAGTTTAGAATATCGGAGGCGTTGAGGGCGAAGCTGAAGGAGAAGGGGATAGAATCGCTGTTTCCCATTCAAGCCATGACCTTCGATACGATCCTTGATGGCTCCGATTTGGTTGGACGCGCTCGCACCGGTCAGGGTAAAACACTGGCCTTTGTGTTGCCAATATTAGAGTCTTTGACAAATGGTCCAGCTAAAGCGGCAAGAAAGACTGGCTATGGCAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTGTTTGCTGATTTTGAAGTTTATGGTTCGGCAATGGGATTGACTTCTTGCTGTTTATATGGTGGAGCTCCATATCATGCTCAAGAGATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGAACACCGGGTCGCATCAAGGATCATATAGAGAGGCAAAATATTGACTTGAGCCAACTAAAGTTCCGTGTCCTTGACGAGGCAGATGAGATGCTGAGGATGGGGTTTGTTGAAGATATTGAACTTATCCTAGGTAAGGTAGAAGATGTTAATAAAGTTCAGACACTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCAGATTCAAGCAAAATTTCTGAAACGAGATAAGAAAACTGCTGATCTTGTTGGCAATGAGAAAATGAAGGCTAGCACAAATGTTAGGCATATTGTTCTTCCATGCAATAGTTCTGCCAGGTCGCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGTCGGACAATTATATTTACTGAGAAGAAGGAGTCTGCTTCTGAGCTTGCGGGATTGCTGCCTGGTGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGGGAGGTTACATTGTCAGGTTTTAGGTCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCAGCTAGGGGTCTAGATATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTGGAAGCCTATATCCATCGCTCTGGGCGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAAAGAATCAGGCGTGAAATTTGAACACGTATCTGCTCCTCAGTCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTATCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGTTGAATTAGTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACGTTACTTCTTGAGATTGGAAGACCTATCTTCACCCCATCCTTTGCATTTGGAATCCTGAGGAGATTTATGCCTGAGGAGAAGGTTGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATTCATATCTTACTGGTCAGCAGAATGCTGCTAATGTAAGCCTAGAGGTGTTAAAAGCATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGAAGATTTGGTGGTGGCCGTGGGTTTAATGATAGACATGGTGGGAATAGGTATTCAGGTGGAAGAGGTGGCAGGAATAATAGGTTTTCAAATGGTTTTAACGGTGGGAGAGGTAATGGTGGCAGAGGGGGGAAGAGATGGTAA | 2106 | 0.4511 | MPSLPLSNGAALSESPKDKTKKKKEKKNQPLNDAVSELEVLGSKSKSKKNSKESKKRKKGSDEEEEQEKSETSSDLVEPTEEGSGMKESKKKKKKARVEEEHEMEVEKEEEVEKENPNAISKFRISEALRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKTGYGRSPSVLVLLPTRELASQVFADFEVYGSAMGLTSCCLYGGAPYHAQEIKLKRGVDIVVGTPGRIKDHIERQNIDLSQLKFRVLDEADEMLRMGFVEDIELILGKVEDVNKVQTLLFSATLPDWVKQIQAKFLKRDKKTADLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQSDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVELVAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAFGILRRFMPEEKVEAVQGLTLTADGNGAVFDVPAKDLDSYLTGQQNAANVSLEVLKALPRLQERDQSRGGRFGGGRGFNDRHGGNRYSGGRGGRNNRFSNGFNGGRGNGGRGGKRW. | 702 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca9g05180 | 701 | CDD | GUCT_RH7_like | 559 | 644 | - | - | |
Seca9g05180 | 701 | CDD | SF2_C_DEAD | 346 | 472 | - | - | |
Seca9g05180 | 701 | Gene3D | - | 75 | 331 | IPR027417 | - | |
Seca9g05180 | 701 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Seca9g05180 | 701 | Pfam | DEAD/DEAH box helicase | 142 | 319 | IPR011545 | GO:0003676|GO:0005524 | |
Seca9g05180 | 701 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 196 | 475 | IPR027417 | - | |
Seca9g05180 | 701 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 60 | 535 | - | - | |
Seca9g05180 | 701 | MobiDBLite | consensus disorder prediction | 15 | 32 | - | - | |
Seca9g05180 | 701 | Gene3D | - | 340 | 568 | IPR027417 | - | |
Seca9g05180 | 701 | FunFam | DEAD-box ATP-dependent RNA helicase 7 | 569 | 641 | - | - | |
Seca9g05180 | 701 | SMART | helicmild6 | 386 | 463 | IPR001650 | - | |
Seca9g05180 | 701 | Pfam | Helicase conserved C-terminal domain | 365 | 463 | IPR001650 | - | |
Seca9g05180 | 701 | CDD | DEADc | 129 | 327 | - | - | |
Seca9g05180 | 701 | MobiDBLite | consensus disorder prediction | 56 | 113 | - | - | |
Seca9g05180 | 701 | SMART | ultradead3 | 137 | 349 | IPR014001 | - | |
Seca9g05180 | 701 | Pfam | GUCT (NUC152) domain | 552 | 647 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Seca9g05180 | 701 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 275 | 283 | IPR000629 | - | |
Seca9g05180 | 701 | MobiDBLite | consensus disorder prediction | 650 | 701 | - | - | |
Seca9g05180 | 701 | Gene3D | - | 569 | 641 | - | - | |
Seca9g05180 | 701 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 149 | 331 | IPR014001 | - | |
Seca9g05180 | 701 | Coils | Coil | 90 | 115 | - | - | |
Seca9g05180 | 701 | SUPERFAMILY | RNA-binding domain, RBD | 556 | 639 | IPR035979 | GO:0003676 | |
Seca9g05180 | 701 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 360 | 502 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca9g05180 | Seca-Chr9 | 155233157 | 155238856 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca9g05180 | 155 | 469 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 31.975 | 9.91e-40 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca9g05180 | K16911 | - | jre:108998595 | 939.102 |