Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05180 ATGCCTTCTCTTCCTCTCTCCAACGGCGCAGCTCTCAGCGAGAGCCCCAAAGACAAGACAAAGAAGAAGAAGGAGAAGAAGAACCAGCCCCTAAACGACGCCGTTTCAGAGCTGGAAGTTCTAGGCTCTAAGAGCAAGAGCAAAAAGAACTCGAAGGAGAGCAAGAAGCGGAAGAAGGGTTCGGATGAGGAAGAGGAGCAGGAGAAGAGTGAGACTAGCTCCGACCTCGTGGAGCCCACAGAGGAAGGCTCGGGAATGAAGGAGAGTAAGAAGAAGAAGAAGAAAGCAAGGGTTGAGGAAGAACACGAGATGGAAGTAGAAAAAGAAGAAGAGGTTGAGAAGGAGAATCCGAATGCGATTTCCAAGTTTAGAATATCGGAGGCGTTGAGGGCGAAGCTGAAGGAGAAGGGGATAGAATCGCTGTTTCCCATTCAAGCCATGACCTTCGATACGATCCTTGATGGCTCCGATTTGGTTGGACGCGCTCGCACCGGTCAGGGTAAAACACTGGCCTTTGTGTTGCCAATATTAGAGTCTTTGACAAATGGTCCAGCTAAAGCGGCAAGAAAGACTGGCTATGGCAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTGTTTGCTGATTTTGAAGTTTATGGTTCGGCAATGGGATTGACTTCTTGCTGTTTATATGGTGGAGCTCCATATCATGCTCAAGAGATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGAACACCGGGTCGCATCAAGGATCATATAGAGAGGCAAAATATTGACTTGAGCCAACTAAAGTTCCGTGTCCTTGACGAGGCAGATGAGATGCTGAGGATGGGGTTTGTTGAAGATATTGAACTTATCCTAGGTAAGGTAGAAGATGTTAATAAAGTTCAGACACTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCAGATTCAAGCAAAATTTCTGAAACGAGATAAGAAAACTGCTGATCTTGTTGGCAATGAGAAAATGAAGGCTAGCACAAATGTTAGGCATATTGTTCTTCCATGCAATAGTTCTGCCAGGTCGCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGTCGGACAATTATATTTACTGAGAAGAAGGAGTCTGCTTCTGAGCTTGCGGGATTGCTGCCTGGTGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGGGAGGTTACATTGTCAGGTTTTAGGTCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCAGCTAGGGGTCTAGATATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTGGAAGCCTATATCCATCGCTCTGGGCGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAAAGAATCAGGCGTGAAATTTGAACACGTATCTGCTCCTCAGTCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTATCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGTTGAATTAGTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACGTTACTTCTTGAGATTGGAAGACCTATCTTCACCCCATCCTTTGCATTTGGAATCCTGAGGAGATTTATGCCTGAGGAGAAGGTTGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATTCATATCTTACTGGTCAGCAGAATGCTGCTAATGTAAGCCTAGAGGTGTTAAAAGCATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGAAGATTTGGTGGTGGCCGTGGGTTTAATGATAGACATGGTGGGAATAGGTATTCAGGTGGAAGAGGTGGCAGGAATAATAGGTTTTCAAATGGTTTTAACGGTGGGAGAGGTAATGGTGGCAGAGGGGGGAAGAGATGGTAA 2106 0.4511 MPSLPLSNGAALSESPKDKTKKKKEKKNQPLNDAVSELEVLGSKSKSKKNSKESKKRKKGSDEEEEQEKSETSSDLVEPTEEGSGMKESKKKKKKARVEEEHEMEVEKEEEVEKENPNAISKFRISEALRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKTGYGRSPSVLVLLPTRELASQVFADFEVYGSAMGLTSCCLYGGAPYHAQEIKLKRGVDIVVGTPGRIKDHIERQNIDLSQLKFRVLDEADEMLRMGFVEDIELILGKVEDVNKVQTLLFSATLPDWVKQIQAKFLKRDKKTADLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQSDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVELVAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAFGILRRFMPEEKVEAVQGLTLTADGNGAVFDVPAKDLDSYLTGQQNAANVSLEVLKALPRLQERDQSRGGRFGGGRGFNDRHGGNRYSGGRGGRNNRFSNGFNGGRGNGGRGGKRW. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05180 701 CDD GUCT_RH7_like 559 644 - -
Seca9g05180 701 CDD SF2_C_DEAD 346 472 - -
Seca9g05180 701 Gene3D - 75 331 IPR027417 -
Seca9g05180 701 MobiDBLite consensus disorder prediction 1 113 - -
Seca9g05180 701 Pfam DEAD/DEAH box helicase 142 319 IPR011545 GO:0003676|GO:0005524
Seca9g05180 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 475 IPR027417 -
Seca9g05180 701 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 60 535 - -
Seca9g05180 701 MobiDBLite consensus disorder prediction 15 32 - -
Seca9g05180 701 Gene3D - 340 568 IPR027417 -
Seca9g05180 701 FunFam DEAD-box ATP-dependent RNA helicase 7 569 641 - -
Seca9g05180 701 SMART helicmild6 386 463 IPR001650 -
Seca9g05180 701 Pfam Helicase conserved C-terminal domain 365 463 IPR001650 -
Seca9g05180 701 CDD DEADc 129 327 - -
Seca9g05180 701 MobiDBLite consensus disorder prediction 56 113 - -
Seca9g05180 701 SMART ultradead3 137 349 IPR014001 -
Seca9g05180 701 Pfam GUCT (NUC152) domain 552 647 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca9g05180 701 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Seca9g05180 701 MobiDBLite consensus disorder prediction 650 701 - -
Seca9g05180 701 Gene3D - 569 641 - -
Seca9g05180 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 331 IPR014001 -
Seca9g05180 701 Coils Coil 90 115 - -
Seca9g05180 701 SUPERFAMILY RNA-binding domain, RBD 556 639 IPR035979 GO:0003676
Seca9g05180 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 502 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05180 Seca-Chr9 155233157 155238856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05180 155 469 Eukaryotic Initiation Factors Gene Family AT1G72730 31.975 9.91e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05180 K16911 - jre:108998595 939.102