Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05114 ATGCCATCACGGCAACTCTCTCAATCTCAGCCGTCCACGTCAGACTTACCTGACCCATTCTCACCGCCACAAACACCACCCCCTCCCCACCCCCACCCCCACCGCCACCACAACCACCTTACTCCTCTCCTCGCCGCCACCGCCTCCGCATGCTCCCTCCTCCTCCTCGCCATCCTCTGCCGCCGCACCCTCACCCGAAAACGCACCGCCCCATTCTCCTCCGACACTCACCGCCTCTCCTACTCCCTCCTCCGCCGCGCCACCGACTCCTTCTCCTCCCGCCTCGGCCATGGCGGCTTCGGCTCCGTCTTCGCCGGCACCCTCCCTCCGCCGTCACGAAAACCCATCGCCGTCAAGCTCATGGACTCCTCCTCCCACCAGGGTGAACGTGAGTTCCAAAACGAACTCTTCTTCGCCTCAAGGCTCCGTTCAAGCCACGTCATCGCTGCGGTTGGGTTTTCCTCAGACCCGAAACGACGCCGTTTCCTCCTCGTTTACGACCTCATGCAAAACGGTAACCTCCAAGACGCGCTCTTGCGACGCAAGTGCCCTGAACTCTTCGATTGGAACAAGCGCTTCGCCATTGTGTTGGACATAGCTAAAGGTATTCACTACCTTCACTCTTGTGACCCTCCAATTATCCATGGAGACATAAAACCTAGTAACATCTTGCTGGATCGTGATTTCTCAGCGAAAATTGGGGATTTTGGACTTGCCCGTTTGAAATTGGAACCACCCCAGGTTGAGTTGGACATTTTAAGTAACAATGATGAAGAGAAGAAAAAGAAGGAAGAAGCGGAGTGTGATGGTGTTGGGGTTGTGATTGATGATTGTGTATCAGTGGAAAGTGTGCATACTGGTTTTTTGGAAGAGGGTCATTTGGGTGTGGAGCAATCCCCTGCTTCGCCGGAGACAATGACAATAACCGCCTCGCCGGAGATGGGTTTGGCGATGGCTGCATCGCCGGGGTTTGATAAGGCTAGTGTGCAGAGTGAGAAGGATGTTGATGTTGTTGGGGGTTTTAAGAGGAATGGTAAAGGGCTAAAGAGTAATTCAGTGAGGGATTGGTGGTGGAAACATGACAATGAGGTTGTGGCTTCCGGTTCAGGTTCAACTCCGGTTGGTGAAGCTAAGAAGGTTAAGGATTATGTGATGGAGTGGCTTGGGAGGGAGGTGAACAAGGAAGGGACCAATAAGAGTGAATTGGTAGGAGGGAAACCAGAGAAGAAGAACAAGAAGAAGAGCAAGAAGCAAGAATTGGAATGGTGGGAATCCATGGATGAGGAAAATGTTGGTGAGGTTTTGAGGAAGCAGAGGAGAAGGCCAGTGAGGGAATGGTGGAAGGATGAGCATTGTGAAGAGGTTGAAAAGAAGAAAAAAAAGAAGAAGAAAAAGGGTGTAGAGAGTGATGACAATGTTGATGATTGGTGGGTGAGTGATGATGCATCATTATATGGGGATAGAAAGAAGAAGATTAAGAGCAGAAGCAGGAATAACCGTGGTAGTGTAGATTGGTGGTTAGAAGGGTTCAGTGGAGAGCTATGGAGAGCACGCAGGAACAGCTTTGATTCTGTTAGTGGAGAAATTCCAAAGAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACTGTTTGTTATGTTGCTCCTGAGTATGGCTATGGTGGAGAAGTTTCAGAGAAGTGTGATGTATATAGCTTTGGTGTTTTATTGCTTGTTATCATTTCTGGGAGGCGTCCACTTCAGGTAACTGGTTCACCAATGTCAGAGTTTCAAAGAGCAAATCTTTTGTCATGGGCACGCCATTGTGCAAGGAATGGGAAGCTCATTGAGCTGGTTGATCAGTCCATTCAATCATTGGATAAAGAACAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTTTGCTTAAGATACCTGCTCGTCGTCCTTCAATGAAGGAGGTTGTGGGAATGCTTAGTGGTGAATTGGAGCCACCCCAATTGCCTGTTGAGTACTCACCATCAACCCCTAACGGGTTCCCTTTCAAGTCTAGGAAAAAAATCCGGTGA 2052 0.4985 MPSRQLSQSQPSTSDLPDPFSPPQTPPPPHPHPHRHHNHLTPLLAATASACSLLLLAILCRRTLTRKRTAPFSSDTHRLSYSLLRRATDSFSSRLGHGGFGSVFAGTLPPPSRKPIAVKLMDSSSHQGEREFQNELFFASRLRSSHVIAAVGFSSDPKRRRFLLVYDLMQNGNLQDALLRRKCPELFDWNKRFAIVLDIAKGIHYLHSCDPPIIHGDIKPSNILLDRDFSAKIGDFGLARLKLEPPQVELDILSNNDEEKKKKEEAECDGVGVVIDDCVSVESVHTGFLEEGHLGVEQSPASPETMTITASPEMGLAMAASPGFDKASVQSEKDVDVVGGFKRNGKGLKSNSVRDWWWKHDNEVVASGSGSTPVGEAKKVKDYVMEWLGREVNKEGTNKSELVGGKPEKKNKKKSKKQELEWWESMDEENVGEVLRKQRRRPVREWWKDEHCEEVEKKKKKKKKKGVESDDNVDDWWVSDDASLYGDRKKKIKSRSRNNRGSVDWWLEGFSGELWRARRNSFDSVSGEIPKSGGVSSTPSMRGTVCYVAPEYGYGGEVSEKCDVYSFGVLLLVIISGRRPLQVTGSPMSEFQRANLLSWARHCARNGKLIELVDQSIQSLDKEQALLCIKVALLCLLKIPARRPSMKEVVGMLSGELEPPQLPVEYSPSTPNGFPFKSRKKIR. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05114 683 MobiDBLite consensus disorder prediction 1 15 - -
Seca9g05114 683 MobiDBLite consensus disorder prediction 396 419 - -
Seca9g05114 683 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g05114 683 MobiDBLite consensus disorder prediction 661 683 - -
Seca9g05114 683 Gene3D Phosphorylase Kinase; domain 1 72 168 - -
Seca9g05114 683 PANTHER OS07G0586332 PROTEIN 1 683 IPR044576 -
Seca9g05114 683 Gene3D Transferase(Phosphotransferase) domain 1 169 268 - -
Seca9g05114 683 Gene3D Transferase(Phosphotransferase) domain 1 522 660 - -
Seca9g05114 683 SUPERFAMILY Protein kinase-like (PK-like) 72 668 IPR011009 -
Seca9g05114 683 Pfam Protein tyrosine and serine/threonine kinase 539 651 IPR001245 GO:0004672|GO:0006468
Seca9g05114 683 Pfam Protein tyrosine and serine/threonine kinase 91 242 IPR001245 GO:0004672|GO:0006468
Seca9g05114 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Seca9g05114 683 ProSiteProfiles Protein kinase domain profile. 89 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05114 683 ProSitePatterns Protein kinases ATP-binding region signature. 95 119 IPR017441 GO:0005524
Seca9g05114 683 SMART serkin_6 89 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05114 Seca-Chr9 151991116 151993191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05114 531 650 Receptor kinase-like Gene Family AT3G58690 33.333 8.70e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca9g05114 PK_Tyr_Ser-Thr 7.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05114 - - lja:Lj2g3v0473820.1 925.62