Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05112 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCAAGAGCAGCAACACAAAATCTCTGAAGATCTGATTCTGGATCATGATTGTGTTCCTCTCAGTGTCAATGATAATAATTCTGATAAACAATTCAGAAGCAGCCACCCACAGAAACTATTTTATGGCACTGACAAGAACAATCATGGTAATTCTAATGATCATAAGAAGAAGAAGATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCTTTTATTCATCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGTTATTCTCTGATGGGTTTTCAGGGAAAGCGTTCAATATCTGACCACATGAATGAGGCAGTGAATTACATAAAACACATGCAGAATAAAATCAAAGAACTTGGTGACAAGAGAGAAGAACTGAAGAAACTCTTTGATTCCAAGAACAAGATGGAAAACCATGAGATCAATAATCATACATCTGGGAACTTCAGTGTCCACCAGAATAATGGTATTCTGGGAATAGAAATTACAAGTGATGGTGGTTTGAAAGAGGAAAGACTCAAACTTTCAAAGTTAATACAATTGCTGCTTGAAGAAGGACTTGAAGTTGTTAGTTGCATTTCAAACCAAGTCAATGGCAGATTGCTTCACAGTGTCCAGTGTGAGGTTAACAATTCCAACAGTGTAGATCTATCTGAGCTGAGAAGGAAAATTGCCAATGTAATTCCGACATTAAGATGTTCTGATTCTGATTAG 783 0.3819 MFPLQRGNELVIQFSNSPHQEQQHKISEDLILDHDCVPLSVNDNNSDKQFRSSHPQKLFYGTDKNNHGNSNDHKKKKMVHREIERQRRQEMATFYSSLRSLLPLEFIKGYSLMGFQGKRSISDHMNEAVNYIKHMQNKIKELGDKREELKKLFDSKNKMENHEINNHTSGNFSVHQNNGILGIEITSDGGLKEERLKLSKLIQLLLEEGLEVVSCISNQVNGRLLHSVQCEVNNSNSVDLSELRRKIANVIPTLRCSDSD. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05112 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 135 IPR011598 GO:0046983
Seca9g05112 260 Pfam Helix-loop-helix DNA-binding domain 76 136 IPR011598 GO:0046983
Seca9g05112 260 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 248 - -
Seca9g05112 260 Coils Coil 132 152 - -
Seca9g05112 260 FunFam Transcription factor bHLH126 67 163 - -
Seca9g05112 260 CDD bHLH_AtORG2_like 76 152 - -
Seca9g05112 260 SMART finulus 81 141 IPR011598 GO:0046983
Seca9g05112 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 151 IPR036638 GO:0046983
Seca9g05112 260 Gene3D - 65 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05112 Seca-Chr9 151959557 151961010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05112 57 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.132 3.66e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g05112 HLH 8.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05112 - - gmx:100780888 322.398