Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05108 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACAGAAAGACAAAGAAGGCAAGAGATGGCCCAACTCTGCACCACACTTAGATCCCTTCTGCCTTTAGAATATATTAAGGGAAAGCGCTCAACTTCTGATCATGTGTTTGAGGCTATCAATTATATCAACCATCTACAGAATAAGGTGAAGCAATTGGAAGCTAAGAAGGATGAGTTAAAGAAAGTGGTGCCTAATTTGAGTACTAATACTGACCCTGATCATGAAAGTGAAAGCTCTACTAGCAATCTTCCACCCTTTGTTAATATTCAACCTTTTCATGGAGGCCTTGAGATTATGTGCAGTTGCAACATGTTTCCTTTGTCAAGAATTATAGAGATATTGCTTCAAGAAGGGATTAATGTTGTTAGCAGTACTTCCACCAAAATGGATGGTAGATTCATACACACTATAAGATCAGAGGATCCAATTCATCCAAATATGAGTGGCACTGATTACTCTGAGCTGCAAAGAAAGCTTATGGAAGCAATATCATCTTCAAGTAATAATTAA 543 0.3757 MDENKKWMHKETERQRRQEMAQLCTTLRSLLPLEYIKGKRSTSDHVFEAINYINHLQNKVKQLEAKKDELKKVVPNLSTNTDPDHESESSTSNLPPFVNIQPFHGGLEIMCSCNMFPLSRIIEILLQEGINVVSSTSTKMDGRFIHTIRSEDPIHPNMSGTDYSELQRKLMEAISSSSNN. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05108 180 Gene3D - 1 83 IPR036638 GO:0046983
Seca9g05108 180 Coils Coil 46 80 - -
Seca9g05108 180 CDD bHLH_AtORG2_like 5 72 - -
Seca9g05108 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 76 IPR036638 GO:0046983
Seca9g05108 180 SMART finulus 10 62 IPR011598 GO:0046983
Seca9g05108 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Seca9g05108 180 FunFam Transcription factor bHLH126 1 85 - -
Seca9g05108 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 173 - -
Seca9g05108 180 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05108 Seca-Chr9 151839583 151841108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05108 9 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.462 2.17e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g05108 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05108 - - ccaj:109791323 259.996