Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05095 ATGATTGGTCAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGAACCGCGGTGGCAATTAAGGAAATGCTAGATTTGGACACTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGAGATTATAAGCAAAATAAAGCACATGAATCTTGTTGCTCTTAGGGGTTGTTGTGTTTCAAGTGATAATTTGAAAGGTAAGAGGAGGTCTTTAGTTTATGATTTTATGCCTAATGGGAACCTCATTTACCAATTATCTCTTGTTGGAGCTAATAGGCTAATGTGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACTAACATACTTTTGGATTCCAAAATGAGTGCTAAATTGGCAGATTTTGGGTTGGCAAAGCAAGGTAATGAAGGGCAGTCTCATCTCACCACAAGGGATTTGCACCAGCATTAG 498 0.4036 MIGQGGDGIVYKGTLSDGTAVAIKEMLDLDTKGDEEFCYEVEIISKIKHMNLVALRGCCVSSDNLKGKRRSLVYDFMPNGNLIYQLSLVGANRLMWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLADFGLAKQGNEGQSHLTTRDLHQH. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05095 165 SMART serkin_6 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05095 165 Gene3D Phosphorylase Kinase; domain 1 2 77 - -
Seca9g05095 165 PANTHER OS01G0750732 PROTEIN 1 161 - -
Seca9g05095 165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca9g05095 165 Pfam Protein kinase domain 2 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05095 165 FunFam Os07g0541700 protein 80 163 - -
Seca9g05095 165 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05095 165 SUPERFAMILY Protein kinase-like (PK-like) 1 157 IPR011009 -
Seca9g05095 165 Gene3D Transferase(Phosphotransferase) domain 1 78 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05095 Seca-Chr9 151246069 151246566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05095 1 165 Receptor kinase-like Gene Family AT1G11050 59.524 6.96e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca9g05095 Pkinase 8.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05095 - - gmx:100820563 286.96