Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05079 ATGGGAAGAGGAAGGGTTGTTCTAGAGAGAATAGAGAACAAGATCAACCGACAAGTAACCTTCTCAAAGCGTAGGAGTGGATTGCTGAAGAAAGCCTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTTGCCCTTATCATCTTTTCTAGCAGAGGCAAGGTTTTCCAATACAGCAGCACTGACATTAACAAGATCATTGAAAGGTATCGCCAATGTCGTTACAAGTCCCAGGCTGGCGATTCATTTGAACATGAATCACAGAGCTTATACCAGGAGTTCTTGAAATTAAGATCGAAATATGAGTCTCTAGAGCGGAGACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTGGTTTGAAAGAATTGCAGAGCCTTGAGGAACAACTAGACAAAACGCTCGTGCTAGCTCGACAGCAGCAAGTATTGTCACTAGTTCGACATGAGTAA 450 0.4289 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKVFQYSSTDINKIIERYRQCRYKSQAGDSFEHESQSLYQEFLKLRSKYESLERRQRHFQGEELEPLGLKELQSLEEQLDKTLVLARQQQVLSLVRHE. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05079 149 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Seca9g05079 149 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Seca9g05079 149 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Seca9g05079 149 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Seca9g05079 149 Pfam K-box region 83 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g05079 149 ProSiteProfiles K-box domain profile. 86 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g05079 149 Coils Coil 120 140 - -
Seca9g05079 149 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca9g05079 149 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g05079 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca9g05079 149 Coils Coil 86 106 - -
Seca9g05079 149 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca9g05079 149 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g05079 149 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g05079 149 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05079 Seca-Chr9 150505571 150513329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05079 1 142 MADS-box Gene Family AT2G45650 59.859 3.23e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g05079 K-box 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05079 K09264 - gmx:100793681 226.868