Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05055 TTAACTTTAAATACATTTGTGACTGTCTCCACTCTCCAGCCAAAAGAAAGTAGTCCAGAAAAAGATGCAAACAAGACTTTGAACAGTCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGCAATGTTGTGAATAAACTGTTTGTTTCATACAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCTTGACATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGATAACTGTAGCCGGACAGATCAACTTGTGGATCTAGACTCCCATGTGGACCCTTAA 351 0.4046 LTLNTFVTVSTLQPKESSPEKDANKTLNSHSASMMTYSDCEEEDVIPMSNVVNKLFVSYKEEIKRLKAENLDMAHKEAFSTAAKNWANFPPTQCKGDEDNCSRTDQLVDLDSHVDP. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05055 116 Pfam YABBY protein 34 93 IPR006780 GO:0007275
Seca9g05055 116 MobiDBLite consensus disorder prediction 1 17 - -
Seca9g05055 116 PANTHER PROTEIN YABBY 6-RELATED 56 104 IPR006780 GO:0007275
Seca9g05055 116 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05055 Seca-Chr9 149087831 149088468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05055 13 100 C2C2-YABBY Transcription Factor Family AT1G23420 43.119 1.59e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca9g05055 YABBY 2e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05055 K25796 - gmx:100806755 164.466