Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05042 ATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAAGTAAAGACTTTGGTGCCTGGTGACCGTGTGGCAATTGAGCCTGGGATCAGTTGTTGGCGTTGTGACCATTGCAAACTGGGTCGATATAATTTATGCCCTGATATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGGTAGTGCATCCAGCAGATCTATGTTTCAAACTGCCAGACAATGTGAGTTTGGAAGAAGGGGCAATGTGTGAACCCTTAAGTGTTGGTGTTCATGCTTGTAGACGAGCTAATATTGGACCAGAAACAAATGTTTTGATCATGGGAGCAGGACCTATAGGACTTGTTACAATGCTTGCAGCTCGCGCTTTTGGAGCTCCCAGGATAGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGATATTGTCAAAGTTTCAACAAACATTCAGGATTTAGCTGAAGAAGTTGAGCAGATACATAAGGTTATGGGAGCTGGTGTAGATGTTACCTTTGATTGTGCTGGTTTTGACAAAACTATGTCTACAGCATTGACTGCTACTCAACCAGGGGGCAAAGTTTGCCTAGTGGGGATGGGTCATTCTGAAATGACTGTCCCACTCACCCCTGCTGCTGCAAGGGAAGTTGATGTGATTGGCATTTTCCGCTATAAGAACACATGGCCTCTTTGCCTTGAGTTTCTGAGGAGTGGCAAAATCGATGTGAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAGAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCCATTAAGGTCATGTTCAATCTCTAG 873 0.4433 MVIGHECAGIIEEVGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKSLGADDIVKVSTNIQDLAEEVEQIHKVMGAGVDVTFDCAGFDKTMSTALTATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05042 290 CDD sorbitol_DH 1 289 IPR045306 GO:0016616
Seca9g05042 290 Pfam Zinc-binding dehydrogenase 118 248 IPR013149 -
Seca9g05042 290 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 4 18 IPR002328 GO:0008270|GO:0016491
Seca9g05042 290 SUPERFAMILY GroES-like 1 117 IPR011032 -
Seca9g05042 290 Gene3D - 95 235 - -
Seca9g05042 290 Pfam Alcohol dehydrogenase GroES-like domain 1 78 IPR013154 -
Seca9g05042 290 Gene3D - 1 276 - -
Seca9g05042 290 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 254 IPR036291 -
Seca9g05042 290 FunFam Sorbitol dehydrogenase 95 235 - -
Seca9g05042 290 PANTHER SORBITOL DEHYDROGENASE 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05042 Seca-Chr9 148329180 148333831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05042 1 223 Monolignol Biosynthesis Gene Families AT4G37980 27.155 5.40e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05042 K00008 - gmx:100791559 563.533