Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05039 ATGGCTGTTGTCAAGAGCAACAGCTGCACTGAACCTTGTACTTCATACAATTGTTACAAAGTGCCAGGCTTGACCGAAACCATATTAGATACAAATCATACCTCTAATTTGAAAGATCGGTATGAACTTGGGGAGCAGTTGGGTTGGGGTCAATTTGGTGTCATAAGAGCATGCTCTGATAGGTTGACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTGTGGATGATCTGAGGAGTGTAAAACTTGAGATTGAGATAATGGCTAAGCTATCTGGGCACCCAAATGTTGTTGATCTCAAGGCAGTTTATGAAGAGGAAGGTTTTGTTCATTTGGTGATGGAGCTTTGTGCGGGAGGGGAGTTGTTTCACCGATTAGAGAAGCATGGGCGGTTTTCTGAATCTGAAGCTAGGGTTCTCTTTAAGCATTTAATGCAGGTGGTCTTGTATTGTCATGAAAATGGGATTGTTCATAGGGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGAGCCTCCTCATCTCCAATTAAATTGGCAGATTTTGGGCTTGCCACCTACATAAAGCCTGGTATTTGCTTCTTTGCTTCTGGACAGAGTTTGCACGGGTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTAGCTGGTGCATATAACCAGGCAGCTGATGTGTGGAGTGCAGGGGTTATACTTTACATTCTATTGAGTGGGATGCCTCCATTTTGGGGGAAGACCAAATCCCGGATATTTGAAGCTGTTAAGGCAGCTGCCCTAAGATTCCCATCAGAACCTTGGGATCGCATTTCTGAATCAGCTAAAGATTTGATCAAGGGAATGCTATGTACAGAACCTTCTCAAAGGCTCACAGCCAAGGAGGTTTTAGATCATTGCTGGATGGAAAGCAATCAAACAAATCCTGAACAACTAAGTGAACATATTATCCGAAGTTGTGAAGACTGGGATGTTGGTGGCGGCTCATTTTCTACCCCTTTTATGTCCAGGAATCAGGACATCAGCTTCGGTGCCGGATCACCTACTTGTGATGCTCAATCACCCACATTCACATGCAGATCATCATTTTCTTCTTTTCTGGTGGAACCAGTTACTCCTTGTTTAGCTTCTGGTGGATTTTCATTTCAGAGCACAGACGATTCCCCTGGTCTGGAATTTGCTTCACCTATTCCCTCAATGCTTAGCTTTTCATTTCTCAGCCCTAGTTCTGTTGTTGAGCAAAAGAGTTGTAAATTAGAGTGCTCAGCTAACATTTCAGTTGTAAATGCAATTGCTGGAGAAGCAAGCTTGGGGAAGTTGCTTTTACCACCAGATTCTGTTGAACATGATATTAAAGAAACAGACCGCAAGCCTTCAGAGACTAAAAGGGCAGGTGGAATGAATGGACATAGGGTATTGGGAATCCACAATAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGTACAACTTGACCTTGTGGTGACTGAATCAGTCATCCGTTGGTCATCATGCACTCAACTCCCTACATCTTTGAGATCATCTCTTGTCTGCTAG 1569 0.4334 MAVVKSNSCTEPCTSYNCYKVPGLTETILDTNHTSNLKDRYELGEQLGWGQFGVIRACSDRLTGEVLACKSIAKDRLVTVDDLRSVKLEIEIMAKLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGRFSESEARVLFKHLMQVVLYCHENGIVHRDLKPENILLATRASSSPIKLADFGLATYIKPGICFFASGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAAALRFPSEPWDRISESAKDLIKGMLCTEPSQRLTAKEVLDHCWMESNQTNPEQLSEHIIRSCEDWDVGGGSFSTPFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLVEPVTPCLASGGFSFQSTDDSPGLEFASPIPSMLSFSFLSPSSVVEQKSCKLECSANISVVNAIAGEASLGKLLLPPDSVEHDIKETDRKPSETKRAGGMNGHRVLGIHNKRNRTIGLGECVQLDLVVTESVIRWSSCTQLPTSLRSSLVC. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05039 522 Gene3D Phosphorylase Kinase; domain 1 43 127 - -
Seca9g05039 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Seca9g05039 522 CDD STKc_CAMK 40 305 - -
Seca9g05039 522 Pfam Protein kinase domain 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05039 522 Gene3D Transferase(Phosphotransferase) domain 1 128 327 - -
Seca9g05039 522 FunFam Phosphoenolpyruvate carboxylase kinase 128 322 - -
Seca9g05039 522 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Seca9g05039 522 SUPERFAMILY Protein kinase-like (PK-like) 38 381 IPR011009 -
Seca9g05039 522 ProSiteProfiles Protein kinase domain profile. 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05039 522 FunFam Calcium-dependent protein kinase 1 43 126 - -
Seca9g05039 522 SMART serkin_6 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05039 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05039 Seca-Chr9 148062019 148065389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05039 34 315 EF-hand Containing Proteins AT2G17290 50.355 1.47e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca9g05039 Pkinase 1.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05039 - - gmx:100776088 881.708