Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05029 ATGTTTACCATCAACCACTCTTCCAAACCACATCTTATTTCCACAGAACCTTCTTCTTCTTCCATGGACACGTCATCACCGGTGTCGGAGAGCTCTCCAAGGGCGATATTTTCCGACGAGGAGTTGCTTCTGGCGGCGAGCCACCCGAAGAAGCGTGCCGGGAGGAAGAAGTTCAGGGAGACTCGCCACCCAGTGTACAGGGGTGTGAGGAGGAGGAACTCCAATAAATGGGTGTGTGAAATGAGAGAGCCCAATAAGAAGACCAGGATTTGGCTAGGGACTTTTCCTACGCCAGAAATGGCGGCGCGGGCTCATGATGTGGCGGCGATGGCGCTGAGGGGCCGCTACGCCTGTCTTAATTTTGCCGACTCGGCATGGCGGCTCCCCGTTCCCGCCACCGCCGACCCCAAGGATATACAAAAAGCAGCTGCAGAGGCTGCTGAAGCTTTCAGGCCAAATCTGATTTTAAATACTAATGACATAAGCCACGATAGTGTCCTTCCTCCGCCGCCACTTCGGGCGGTGGCGGCGGAGGAACAGAGTGTGTTCTTTATGGAGGAGGAGTTGGCGATGCCGGAGTTGTTGAGGAATATGGTGCTTATGTCCCCAACACATTGTTTGGGGTATGAGTATGAAGATGCTGACTTGGACATTCAAGATGCTGAGGTGTCCCTATGGAGTTTTTCAATTTAA 693 0.5281 MFTINHSSKPHLISTEPSSSSMDTSSPVSESSPRAIFSDEELLLAASHPKKRAGRKKFRETRHPVYRGVRRRNSNKWVCEMREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSAWRLPVPATADPKDIQKAAAEAAEAFRPNLILNTNDISHDSVLPPPPLRAVAAEEQSVFFMEEELAMPELLRNMVLMSPTHCLGYEYEDADLDIQDAEVSLWSFSI. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05029 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 228 IPR045277 GO:0003700
Seca9g05029 230 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 MobiDBLite consensus disorder prediction 1 32 - -
Seca9g05029 230 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Seca9g05029 230 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Seca9g05029 230 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Seca9g05029 230 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05029 Seca-Chr9 147606592 147607284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05029 23 228 AP2-EREBP Transcription Factor Family AT4G25470 55.399 1.43e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g05029 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05029 - - gmx:547622 316.62