Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05021 ATGTCTGCGGACAAAAGAAAGTGTGTCAGGTCCAACAGCTTGAAAAGTGGTGCAGCACTTTATATTCTGAAACCCTTTTGTGGAGATGACTTCAAAGACATTTGGAAGTATGCAGTGGCAGAAAGAAAAGGGAAACTAGTGATTGAAAATGAATTGAGAAGCAGAGAAGCTGCGTCATCATCAACTGAGCCTAGGGGAAAAAGAAAGCATGGCAAGGGAAAGAGTAAAAAGGAAGACCAAAGTGAAGGAAAGTCTCAGGTTGCAAAGAAACCAAAGTTGGTCTGGACAACATACCTTCAAAATCTTTTTCTGCTTGCCATAAGACAAATTGGATTGGACAGGGCTGTGCCAAAGAAAATTCTCGAGATCATGAATGTACCATACTTGACCAGAGAAAATGTTGCCAGTCACTTACAGAAGTATAGAAACTTCCTGAAAAAAGTTGCAGAAAGAGGAATAATGGAGGGCTTATCTGAAAGCACTCTAAGGTCAAGGTTTGCTTCTAGTATTCCAGCAACAGTGATCCAACACATCCAAACAAGAGCTGAGCAACTGCGTGTTCCTCTGCAGCAATATTTGAAAAGATTATCATATCAAGCAGGAAACAGAACAATAGCCCCCTCTCTTAATTCTTTCAATTATGGTCTAATGAGTCTTTCTGATCAACAAGTTTCAAGCAACAATTATGTGACTACTCAACTTGGGACAGGTCAATTCCCCTATCCATTGCACAATGGCCTGATGCTTCAAAACCAACATGGTAGTTCTTTGAATCAAGTCAGACTTGGACAATCAAGCTTTGGAAGCCATAATATTGGGACTAATAATAATATTGGACAATCAAGCTATGCAAATCCACCATATCAAGCAAATAGCTCATACGATTCTGGTGCTATTTTTCCACCACATGGAGGTGGACATGGTTTGATGACATCTGCAAATGGCCTAATAAGAGGTTACCAAAACTATGGTTCACTGGGAAATCACAACTCTAGCTATGATCAAGGGAATTGGAACATGGGAAATTTGAGCAGCTCTAATGTTCTGCCTCAGACATCTACTTATTATAACTCTGGAATTCAACAGAATGATGGATCACAAATGGTAGGGACTGGGATAAAAGGAGGGCTTAACAATGTTGGTACTGCAAAAAACAATAGCTTTGACTTTAACAATGTTGATACTGCAAACAACATTAGCTTTGGCTTTAACAATGTTGGTAATGCAAACAATGGCTTTGGCTTCATCAATGGGACACAAAATGCAAACATGAATGTGGCATCCTTGGGGAATGGAGATTTTGGTTTGGTTGAAGGAAAATTTGCTTTTCCTTCCTCTGCTTCTAATATTGGTGATGCGTGTGCAAGTGAGCTTCCACCACCAACATTGATCACTGATGGAACACTAGAAGAAAGTGTTTCAGGGCTCCCACCATTGCCTCAACAACTAGATGACATTGTTGTAGAAAATGAGCATCAGAATAATAATGTCACTTCAATCAGTGAGAGTGAGGCCAGTCAACTGGACTATGACCTTTCTGACATTTTCTTCATGCTAGATGAAATAGATCTTCTTAATGAGGTAAGCTAG 1590 0.3981 MSADKRKCVRSNSLKSGAALYILKPFCGDDFKDIWKYAVAERKGKLVIENELRSREAASSSTEPRGKRKHGKGKSKKEDQSEGKSQVAKKPKLVWTTYLQNLFLLAIRQIGLDRAVPKKILEIMNVPYLTRENVASHLQKYRNFLKKVAERGIMEGLSESTLRSRFASSIPATVIQHIQTRAEQLRVPLQQYLKRLSYQAGNRTIAPSLNSFNYGLMSLSDQQVSSNNYVTTQLGTGQFPYPLHNGLMLQNQHGSSLNQVRLGQSSFGSHNIGTNNNIGQSSYANPPYQANSSYDSGAIFPPHGGGHGLMTSANGLIRGYQNYGSLGNHNSSYDQGNWNMGNLSSSNVLPQTSTYYNSGIQQNDGSQMVGTGIKGGLNNVGTAKNNSFDFNNVDTANNISFGFNNVGNANNGFGFINGTQNANMNVASLGNGDFGLVEGKFAFPSSASNIGDACASELPPPTLITDGTLEESVSGLPPLPQQLDDIVVENEHQNNNVTSISESEASQLDYDLSDIFFMLDEIDLLNEVS. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05021 529 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 58 420 IPR044841 GO:0003700|GO:0006355
Seca9g05021 529 Gene3D - 87 149 - -
Seca9g05021 529 MobiDBLite consensus disorder prediction 54 86 - -
Seca9g05021 529 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 144 IPR006447 GO:0003677
Seca9g05021 529 FunFam Two-component response regulator 86 149 - -
Seca9g05021 529 SUPERFAMILY Homeodomain-like 88 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05021 Seca-Chr9 147215226 147217589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05021 1 166 Response Regulator Gene Family AT5G07210 39.806 3.28e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g05021 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05021 - K14491 aprc:113866677 448.358