Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05020 ATGTCTGCGAACAAAAGAAAAAGTGTCAGGTCCAACACCTTGAAAAATGGTGCAGCACTTTATATTCTGAAACCCTTTTGTGGAGATGACTTCAAAGACATTTGGAAGTATGCAGCTGCTGCAAGGAAAGGGAAACTAGTGATTGAAAATGAATTGAGAAGCAGAGAAGGTGAGTCACCATATGAGAAGATCATCTTTCAGGATGTTAACTCCTCTGCTGCAGCATCATCATCAACTGAGCCTGAGAAAAAAAGAAAGCATGGCAAGGGAAAGAGTAAAAAGGAAGACCAAAGTGAAGGAAGGTCTCAGGTTGCAAAGAAACCAAAGTTGGTCTGGACAACATACCTTCAAAATCTTTTTTTGCTTGCCATAAGACAAATTGGATTGGACAGGGTTGTGCCAAAGAAAATTCTCGAGATCATGAATGTACCATACTTGACCAGAGAAAATGTTGCCAGTCACTTACAGGTTTGCTTCACAATTTACTTAATATGTTTCTATAATAAGGCAGAATCTTAG 519 0.3911 MSANKRKSVRSNTLKNGAALYILKPFCGDDFKDIWKYAAAARKGKLVIENELRSREGESPYEKIIFQDVNSSAAASSSTEPEKKRKHGKGKSKKEDQSEGRSQVAKKPKLVWTTYLQNLFLLAIRQIGLDRVVPKKILEIMNVPYLTRENVASHLQVCFTIYLICFYNKAES. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05020 172 MobiDBLite consensus disorder prediction 70 102 - -
Seca9g05020 172 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 161 IPR006447 GO:0003677
Seca9g05020 172 SUPERFAMILY Homeodomain-like 105 159 IPR009057 -
Seca9g05020 172 FunFam Two-component response regulator 103 163 - -
Seca9g05020 172 Gene3D - 103 161 - -
Seca9g05020 172 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 70 156 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05020 Seca-Chr9 147159578 147160208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05020 1 156 Response Regulator Gene Family AT2G27070 38.547 2.04e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g05020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05020 - K14491 aprc:113866677 184.111