Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05008 ATGACGTGTGCGGCGTGTGTGAATTCCGTGGAGAGCATTCTGAGGAACCTCTCGGGAGTGAAAAAAGCGGTGGTGGCTTTGGCTACTTCGTTGGGTGAAGTTGAGTATGATCCTAAAGTGATTAGCAAGGAGGATATTGTTACTGCAATTGAAGATGCTGGTTTCGAGGCTTCGTTTGTGCAGAGTAGTGGGCAGGACGAGGTGGTTTTGGGGGTTGTTGGTGTGTACTCTTTGGTTGATGCTCAGGTTTTGGAAGGCATGCTTAGTGGGATGAAAGGGGTGAGGCAGTTCCGGTTTGATCCTGTGTTGAATGAACTGGATGTTGTGTTTGACCCTGAAGTTATTAATTCTAGATCGTTGGTTGATGGGATCCATGTGGGAAGCAATGGCAAGTTTAAGTTACATGTTAGAAACCCTTATGCCAGAATGGCTTCTAAAGATGTTTCAGAGACCTCAGCTATGTTTCGACTTTTTATTTCCAGCTTGCTTCTTAGTGTGAGTATCTCTTTGCCATGTTGCTATGTTTATGTGTTCTTCATTTGGTTTTATTGCATTTTGTTTCTTTGTCTGTCTTTCTTTCCATCTGATAGTCATCTTTATTGA 603 0.4312 MTCAACVNSVESILRNLSGVKKAVVALATSLGEVEYDPKVISKEDIVTAIEDAGFEASFVQSSGQDEVVLGVVGVYSLVDAQVLEGMLSGMKGVRQFRFDPVLNELDVVFDPEVINSRSLVDGIHVGSNGKFKLHVRNPYARMASKDVSETSAMFRLFISSLLLSVSISLPCCYVYVFFIWFYCILFLCLSFFPSDSHLY. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05008 200 FunFam Copper-exporting P-type ATPase A 1 60 - -
Seca9g05008 200 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Seca9g05008 200 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Seca9g05008 200 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Seca9g05008 200 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Seca9g05008 200 CDD HMA 1 58 IPR006121 GO:0046872
Seca9g05008 200 Gene3D - 1 59 - -
Seca9g05008 200 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 169 - -
Seca9g05008 200 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Seca9g05008 200 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05008 Seca-Chr9 146397499 146398101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05008 1 181 Primary Pumps ATPases AT5G44790 62.567 8.39e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05008 K17686 - gmx:100778219 254.988