Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04998 ATGGCACATTCTCGGGTGGCAGGAGGGTTAACCCAATCATCATCAAGTTCTGGAATTTTTTTTCAAGGAGACGGGCAGTCACAGAATATAGTTAACTCTCACTTAAGCTCGTCTTTTGTTAACTCATCTAACACAATTCCTGGAACCAGTCGTTCTAACCTTGGTCCAGTTCCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTGGGAGCCAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCAAGCTTTAACACAGACCCATACTTACGTTTACCTGCCTCACCCATGTCATTTACATCAAATAATATCAGTATTTCTGGATCATCAGTGATGGATGGTTCCTCTGTAGTACAGCAAAGTTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAGCAGCAGCAGCAGGGTGCTTCAAGTGTTGCGTCTTTGCCTGTATCTCAAACTGGCCCATCTCCACTCCAAATGGGTGCACATGTAGCAGGATCTTTCATTCAAGATCCAAATAACCACCTGGCTAAGAAACCTAGGCTGGATATCAAGCAGGATGATATAATGCAACAGCAGGTAATACAACAGCTTCTTCAGAGACAAGACCCCATGCAATTCCAAGGTCGTAATCCACAGCTACAGGCTTTGCTTCAGCAGCAGCAGAGGCTGAGGCAACAACAAATATTTCAGTCATTGCCACAGTTACAGCGAGCGCACTTGCAACAACAGCAGCAGCAACAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAATGATGCAGCAGCCCTTATCTTCTATGAAGCGCCCACATGATAGTTGTGTTGGTGGGGTATGTTCCCGCCGATTAATGCAGTACCTCTATCATCAAAGGCAACGGCCAACTGATAATAACATTGGCTATTGGAGAAAATTTGTAGCCGAATATTACTCTCCTCGTGCAAAGCAACGGTGGTGCTTGTCATTATATAGTAATGTTGGGCAACATGCACTTGGTGTTTTCCCCCAAGTGGCTATGGGTGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAAGGGATTTGAGGCAACTTTTGATGTACTGCCTAGACTTAATGAAATCAAATTTGGCAGTGGATTGATCGATGAACTTTTGTTTTTGGACATGCCACGTGAAATAAGATCTCCTTCTGGTGAGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTATGAGCAGCTTCGTGTTGTTCGTGAGGGACAACTTCGTATCATATTCACTCAAGATCTGAAGATATTTTCTTGGGAGTTCTGTGCAAGGCGCCATGAAGAACTTCTTCCTCGAAAATTGGTTGCACCACAGGTCAACCAATTGGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGTCAGATGGGGTTTCTCAGCAAGACTTGCAAACAAACAGCAACATGGTTTTGACAGCTGGCCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATATGTGAGGTGTTTGCAGATTTCTGAAGTTTGCAATAGCATGAAAGATCTCATAGATACCTGTTATGATCGCAAAATTGGAGCAATTGAGAGCTTGAAAAAATTTCCTCGAGTCACGACTGAAGCAAAGCTCCAGATGCAAAAGATGCCAGAGATGGAACAGCTAGCGAATGTTCAAGGTCTGCCCACTGATCGTAACACACTTAATAAGCTGATGGCAATGAATCCTGCAATGAACAACCATATAAACAACAATCACAACAATATGGTTAATCGTGGTGGTTCTTTGGGTGGGTCAGCACAGGCTGCTATGGCACTGACCAACTACCAGAGTCTTTTGAGGCAAAATTCAACGAATTCAAGCCCAGGCTCACTTCAGCGAGAAAGACCCTCTTTCAGTAACTCAAACCAGAGTCCCTCTTCCGCTGTGCAAGGTGCTGGTACTGCTTTAATTCCAGGTTCAATGCAGAATTCACCTGTTAGTGGTTTCCCAAGTCCACATTTACCCCCACAGCAGCAGCCGCAGCAACAACAACATCTTCAACCTCACTCATTAAGTGCAAATAGTTTACTGCAACAGAATCATTCACAAGGATCCCAAGGAAATCAAGCTCTGGATCAGCAGATGATCCAGCAAATACTGCAGCAGATGTCAAGTAACAATGGGGGAGTGCAACCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAGTGGGTTGGGTTTTGGGGGCCAAACTCCAGCCATAAGTGGAGGCTCTGCCAATGTTCCTGGGAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAGGCGGCTTCAAACAGTGATTCTTCTGCAGCTGGAGGCAACAATGGATTCAACCAGAGAACATCTGATATGTCACAAAATCTCCATTTGCAAGATGTGGTTCATAATATTTCCCCTGAGTTCACGGATAATCACTTCTTTAACAGTGATCTAGATGATAACATGGGTTTTGACTGGAAGGCATGA 2583 0.4406 MAHSRVAGGLTQSSSSSGIFFQGDGQSQNIVNSHLSSSFVNSSNTIPGTSRSNLGPVPGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASFNTDPYLRLPASPMSFTSNNISISGSSVMDGSSVVQQSSHQDQNAQQLQQNQQQQQGASSVASLPVSQTGPSPLQMGAHVAGSFIQDPNNHLAKKPRLDIKQDDIMQQQVIQQLLQRQDPMQFQGRNPQLQALLQQQQRLRQQQIFQSLPQLQRAHLQQQQQQQQQMQLRQQLQQQMMQQPLSSMKRPHDSCVGGVCSRRLMQYLYHQRQRPTDNNIGYWRKFVAEYYSPRAKQRWCLSLYSNVGQHALGVFPQVAMGAWQCDICGSKSGKGFEATFDVLPRLNEIKFGSGLIDELLFLDMPREIRSPSGEMMLEYTKAVQECVYEQLRVVREGQLRIIFTQDLKIFSWEFCARRHEELLPRKLVAPQVNQLVQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVCNSMKDLIDTCYDRKIGAIESLKKFPRVTTEAKLQMQKMPEMEQLANVQGLPTDRNTLNKLMAMNPAMNNHINNNHNNMVNRGGSLGGSAQAAMALTNYQSLLRQNSTNSSPGSLQRERPSFSNSNQSPSSAVQGAGTALIPGSMQNSPVSGFPSPHLPPQQQPQQQQHLQPHSLSANSLLQQNHSQGSQGNQALDQQMIQQILQQMSSNNGGVQPQSLGGPNANGNMAKSGLGFGGQTPAISGGSANVPGNNGPVSRSNSFKAASNSDSSAAGGNNGFNQRTSDMSQNLHLQDVVHNISPEFTDNHFFNSDLDDNMGFDWKA. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04998 860 PANTHER LIM DOMAIN-BINDING PROTEIN 41 846 IPR029005 -
Seca9g04998 860 MobiDBLite consensus disorder prediction 642 689 - -
Seca9g04998 860 MobiDBLite consensus disorder prediction 746 821 - -
Seca9g04998 860 MobiDBLite consensus disorder prediction 642 710 - -
Seca9g04998 860 MobiDBLite consensus disorder prediction 778 821 - -
Seca9g04998 860 MobiDBLite consensus disorder prediction 127 177 - -
Seca9g04998 860 Pfam LIM-domain binding protein 300 560 IPR029005 -
Seca9g04998 860 MobiDBLite consensus disorder prediction 746 762 - -
Seca9g04998 860 MobiDBLite consensus disorder prediction 127 174 - -
Seca9g04998 860 Coils Coil 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04998 Seca-Chr9 145389495 145395178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04998 295 566 C2H2 Transcription Factor Family AT1G43850 59.191 3.19e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04998 - - gmx:100816886 1136.71