Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04943 ATGGGCTTTCTCCGGCGACTCTTCGGCGGCAAGAAGCACCAAAACTCCCCGCCGGGAACTTCTGACGGGTCGGGTCCCAAACCCGGCAAAGAGAAGAGAAGGAGTTGGAGCTTCGCGAAACACAGCACAAGGGGCAAGTCCAACTCACTCTCAACCCTCAACCACCAATTTGACCCTTCCACTTCCTCTGCTCCCTTCACTGACTCCTTGGACGCCAATAAGCATGCCATCGCCGTTGCTGCCGCCACCGCCGCCGTCGCTGAGGCCGCACTCGCCGCCGCCCACGCTGCCGCAGAGGTCGTCAGACTAACCAGCAGCACCGGAGCCAGTAGTGCACCCGCCACTACAGCTCCAGTCCGGCGGCGGTTGGCGGAGGAAACCGCCGCCGCCGTGAAGATACAGTCAGCGTTCCGAGGTTACTTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGGGGCCACATTGTAAGAAAGCAAACTGCAGATATGCTAAGGCGCATGCAAACATTGGTGCGACTTCAGTCCCGGGCACGTGCGAATCGTGTGCACGTGTCAGATAATATGCACTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGATGATTATGAGCACCCACTTCGTGCCTATAGTACAAAATTTGATGGATCTTCTATCCTCAAGAGATGTAGTTCCAATTCAAATTTCAGGGACATTGACTTAGAGAGAGCCCGGTTTGGTTCCAATTGGTTAGACAGTTGGATGGAAGAAAATGCTTGGAGCCAAACTAGAGATGCTTCATTGAAAAATGGGCACCCTGATGATGACAAGTGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTGAACTCTTCCCATCATTATTTGTCTTCTGATTACAACAACAATGAGAATTTTATGGCATATGAGTCTCCATCAAAGCATTCTTCTTCTAGAGCTCCAAATCCTAGTCTCTCTTCAAGGGAGGTGTTATCCATAGGCTCTTTGAAATTTCACAAAGGAATAAAAGAAGAAGTAGCTTCAAGAACTGCTGAGAATAGTCCACAAGCATTTTCTGCCTCCTCTAGACTTGGAAGTGGTGCAAGGAGAGGTCCTTTTACACCCACTAAAAGTGAGTGTTCATGGGGTTTCTTCAGTGGCTATTCAGGTTATCCCAATTACATGGCCAATACTGAATCTTCTAGAGCTAAGGTTAGGTCACAAAGTGCTCCAAGGCAAAGGCTAGAGTTTGAGAGATATGGTGCTACTAGAAGGTATGTTCAGGGTCTTTGGGAAGAAGGGCCTAATTCAGATAGGGATTCTGATTTCAAGAGCAAGGCCTATTCAACCACAAGCAGATTGAGCAGAATTGGGAGTACCAATTTAAGGTGA 1404 0.4865 MGFLRRLFGGKKHQNSPPGTSDGSGPKPGKEKRRSWSFAKHSTRGKSNSLSTLNHQFDPSTSSAPFTDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSTGASSAPATTAPVRRRLAEETAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARANRVHVSDNMHSFKSSLSHYPVPDDYEHPLRAYSTKFDGSSILKRCSSNSNFRDIDLERARFGSNWLDSWMEENAWSQTRDASLKNGHPDDDKCDKILEVDTWKPHLNSSHHYLSSDYNNNENFMAYESPSKHSSSRAPNPSLSSREVLSIGSLKFHKGIKEEVASRTAENSPQAFSASSRLGSGARRGPFTPTKSECSWGFFSGYSGYPNYMANTESSRAKVRSQSAPRQRLEFERYGATRRYVQGLWEEGPNSDRDSDFKSKAYSTTSRLSRIGSTNLR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04943 467 MobiDBLite consensus disorder prediction 311 330 - -
Seca9g04943 467 MobiDBLite consensus disorder prediction 451 467 - -
Seca9g04943 467 PANTHER IQ-DOMAIN 5-RELATED 21 441 - -
Seca9g04943 467 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Seca9g04943 467 MobiDBLite consensus disorder prediction 1 61 - -
Seca9g04943 467 MobiDBLite consensus disorder prediction 433 467 - -
Seca9g04943 467 Pfam Protein of unknown function (DUF4005) 358 436 IPR025064 -
Seca9g04943 467 SMART iq_5 148 169 IPR000048 GO:0005515
Seca9g04943 467 SMART iq_5 125 147 IPR000048 GO:0005515
Seca9g04943 467 Pfam IQ calmodulin-binding motif 150 167 IPR000048 GO:0005515
Seca9g04943 467 Pfam IQ calmodulin-binding motif 127 147 IPR000048 GO:0005515
Seca9g04943 467 MobiDBLite consensus disorder prediction 350 377 - -
Seca9g04943 467 MobiDBLite consensus disorder prediction 353 367 - -
Seca9g04943 467 MobiDBLite consensus disorder prediction 41 61 - -
Seca9g04943 467 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Seca9g04943 467 Gene3D - 118 152 - -
Seca9g04943 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 171 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04943 Seca-Chr9 143666652 143672084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04943 1 435 IQD Protein Family AT5G62070 46.000 1.50e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04943 - - gmx:100785181 633.254