Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04937 ATGGAGGGTCATGGTGAGATGGGTCTAATTGGAGAGAATTTTGATTCTGGTTTGATGGGAAGAATCAGAGATGATGAGTATGAAAGCAGGTCTGGAAGTGATAACTTTGATGGTGCATCTGGTGATGATCAAGATGCTGGTGATGATCAATCACAGAAGAAAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGCTTTCTTCAAGGAGTCTCCTCATCCTGATGAGAAGCAAAGATCAGATCTCAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAACAGAAGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCAGAGCTGAAAACAGTGTGATGAAGGAAGCTTTAGCAAATCCAATGTGTAACACCTGTGGTGGACCAGCAATTCCTGGCCAAATTTCATTGGAGGAGCACCAAATTAGAATTGAAAATGCTCGATTAAAGGATGAACTGAACAGGATTTGTGCCTTGGCAAACAGGTTCTTGGGTAGGCCACTTTCATCCTTGGCCAGTCCCATGCCTCTGCCAACCCCAAATTCTGGTCTTGAACTTGGTATTGGAAGAAATGGGGCTGGTGGTTCAGGCAATTTTAGCATGTCCTTGCCAATGGGACTTGATGTTGGAGATGGTGTTATGGGCACTCCACCACCTACACTACCTGGGATAAGATCATCAATGGGGTTGATTGGAAATGAAGTCCAGCTTGAGAGATCTATGCTTATAGATGTTGCAGTAGCTGCTATGGATGAATTGCTTAAGATGACTCAACAAGATAGCCCTCTTTGGATTAGGAGTTCAGATGGAAGCAGGGAAGTGCTGAACCATGAGGAGTATTCAAGGGTGTGTTCTTATATCAGGCCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGTTAGTCATAATCAACAGTTTGGCCCTTGTGGACCCATTGATGGATGCGGATCGATGGTCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCACTTTGGATGTAATTTCTAGTGGAATGGGTGGAACCAGAAATGGAGCTTTGCAAGTGATGCATGCTGAGGTTCAATTGCCTTCTCCACTAGTCCCTGTTCGTCAATTGAGTTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGTGTGTGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCATAATGCTACCAATGGAATCCAATTTATGAACTGTAGGAGGCTTCCTTCCGGCTGTGTTGTTCAGGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGATCACTCCCAGTATGATGAGAGTGTTGTCCACCAACTCTATCGCCCATTGGTTAATTCTGGAATTGGATTTGGTGCTCATAGATGGATTGCAACTCTCCAAAGGCAGTGTGAATGCTTTGCAATCCTCATGTCCCCTTCCATACAACCTGAGGACCCCACAGCCATAAGCCAAGCTGGTAAGAGAAGCATAATGAAGCTTGCACAACGCATGACTGATTACTTCTGGTCTGGGATTTGTGTTTCATCGGCTTGCAAGTGGGACATCATTCACATTGGTGGTAACAATGACATGAGAATCATGTCCAAGAAACATGTGGATGAATCTGGTGAGTCTCAGGGTATTGTGCTGAGTGCTGCAACTTCTATATGGATACCAGTGTCAAGGCAGAGGGTGTTTGATTTCTTGCGTGATGGAAGGCTTAGAGGTGAGTGGGATGTCTTGTCTAGTGGTGGAGCAATGCAGGAGATGTTCCATATTCCTAAAGCACAAGGACAAGGAAACTGTGTCTCTATCCTTCGTGCTAATAATGCTACTAATGGGAACGAGAGCAATGTGCTATATCTGCAAGATTCATGGACTGATGTCTCTGCCTCGATGATTGTGTATTCACCAATGACTATGCAATCCTTGAACTTGGTGATGGCTGGTAGTGATTCTTCATTTGTTTTTCTCTTGCCTTCTGGGTTTGCTATTCTTCCAGATGGTCATTCAAGTGGTGTTGGAACTTTAAGTGATGGCAGTGGCAGTAGCGGCGGTGGTGATGGTGGTGGAAGTGTTGTTACAGTTGGGTTACAAATGCTGCTGAGTAACCTCCCAACAGCTAAGCTGACAATGGAGTCAGTTGAAACTGTTAATGGACTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTTGGAGTTGCATGA 2262 0.4443 MEGHGEMGLIGENFDSGLMGRIRDDEYESRSGSDNFDGASGDDQDAGDDQSQKKKKKKYHRHTPQQIQELEAFFKESPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKEALANPMCNTCGGPAIPGQISLEEHQIRIENARLKDELNRICALANRFLGRPLSSLASPMPLPTPNSGLELGIGRNGAGGSGNFSMSLPMGLDVGDGVMGTPPPTLPGIRSSMGLIGNEVQLERSMLIDVAVAAMDELLKMTQQDSPLWIRSSDGSREVLNHEEYSRVCSYIRPKPTGYVTEATRETGLVIINSLALVDPLMDADRWSEMFPSMIARAVTLDVISSGMGGTRNGALQVMHAEVQLPSPLVPVRQLSFLRFCKQHAEGVWAVVDVSVDIGHNATNGIQFMNCRRLPSGCVVQDMPNGFSKITWVDHSQYDESVVHQLYRPLVNSGIGFGAHRWIATLQRQCECFAILMSPSIQPEDPTAISQAGKRSIMKLAQRMTDYFWSGICVSSACKWDIIHIGGNNDMRIMSKKHVDESGESQGIVLSAATSIWIPVSRQRVFDFLRDGRLRGEWDVLSSGGAMQEMFHIPKAQGQGNCVSILRANNATNGNESNVLYLQDSWTDVSASMIVYSPMTMQSLNLVMAGSDSSFVFLLPSGFAILPDGHSSGVGTLSDGSGSSGGGDGGGSVVTVGLQMLLSNLPTAKLTMESVETVNGLISCTIQKIKDALGVA. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04937 753 SMART HOX_1 55 117 IPR001356 GO:0003677
Seca9g04937 753 SUPERFAMILY Bet v1-like 515 747 - -
Seca9g04937 753 SUPERFAMILY Bet v1-like 259 490 - -
Seca9g04937 753 Pfam START domain 267 489 IPR002913 GO:0008289
Seca9g04937 753 CDD START_ArGLABRA2_like 261 488 - -
Seca9g04937 753 CDD homeodomain 60 113 IPR001356 GO:0003677
Seca9g04937 753 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Seca9g04937 753 MobiDBLite consensus disorder prediction 1 64 - -
Seca9g04937 753 MobiDBLite consensus disorder prediction 18 32 - -
Seca9g04937 753 ProSiteProfiles START domain profile. 257 492 IPR002913 GO:0008289
Seca9g04937 753 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Seca9g04937 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 750 IPR042160 -
Seca9g04937 753 Coils Coil 107 142 - -
Seca9g04937 753 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Seca9g04937 753 FunFam Homeobox-leucine zipper protein GLABRA 2 266 488 - -
Seca9g04937 753 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Seca9g04937 753 SMART START_1 266 489 IPR002913 GO:0008289
Seca9g04937 753 FunFam Homeobox-leucine zipper protein HDG1 40 129 - -
Seca9g04937 753 Gene3D - 42 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04937 Seca-Chr9 143315502 143321853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04937 1 750 Homeobox Transcription Factor Family AT3G61150 53.836 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g04937 START 4.6e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04937 K09338 - gmx:100794400 1096.65