LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g04937	ATGGAGGGTCATGGTGAGATGGGTCTAATTGGAGAGAATTTTGATTCTGGTTTGATGGGAAGAATCAGAGATGATGAGTATGAAAGCAGGTCTGGAAGTGATAACTTTGATGGTGCATCTGGTGATGATCAAGATGCTGGTGATGATCAATCACAGAAGAAAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGCTTTCTTCAAGGAGTCTCCTCATCCTGATGAGAAGCAAAGATCAGATCTCAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAACAGAAGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCAGAGCTGAAAACAGTGTGATGAAGGAAGCTTTAGCAAATCCAATGTGTAACACCTGTGGTGGACCAGCAATTCCTGGCCAAATTTCATTGGAGGAGCACCAAATTAGAATTGAAAATGCTCGATTAAAGGATGAACTGAACAGGATTTGTGCCTTGGCAAACAGGTTCTTGGGTAGGCCACTTTCATCCTTGGCCAGTCCCATGCCTCTGCCAACCCCAAATTCTGGTCTTGAACTTGGTATTGGAAGAAATGGGGCTGGTGGTTCAGGCAATTTTAGCATGTCCTTGCCAATGGGACTTGATGTTGGAGATGGTGTTATGGGCACTCCACCACCTACACTACCTGGGATAAGATCATCAATGGGGTTGATTGGAAATGAAGTCCAGCTTGAGAGATCTATGCTTATAGATGTTGCAGTAGCTGCTATGGATGAATTGCTTAAGATGACTCAACAAGATAGCCCTCTTTGGATTAGGAGTTCAGATGGAAGCAGGGAAGTGCTGAACCATGAGGAGTATTCAAGGGTGTGTTCTTATATCAGGCCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGTTAGTCATAATCAACAGTTTGGCCCTTGTGGACCCATTGATGGATGCGGATCGATGGTCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTCACTTTGGATGTAATTTCTAGTGGAATGGGTGGAACCAGAAATGGAGCTTTGCAAGTGATGCATGCTGAGGTTCAATTGCCTTCTCCACTAGTCCCTGTTCGTCAATTGAGTTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGTGTGTGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCATAATGCTACCAATGGAATCCAATTTATGAACTGTAGGAGGCTTCCTTCCGGCTGTGTTGTTCAGGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGATCACTCCCAGTATGATGAGAGTGTTGTCCACCAACTCTATCGCCCATTGGTTAATTCTGGAATTGGATTTGGTGCTCATAGATGGATTGCAACTCTCCAAAGGCAGTGTGAATGCTTTGCAATCCTCATGTCCCCTTCCATACAACCTGAGGACCCCACAGCCATAAGCCAAGCTGGTAAGAGAAGCATAATGAAGCTTGCACAACGCATGACTGATTACTTCTGGTCTGGGATTTGTGTTTCATCGGCTTGCAAGTGGGACATCATTCACATTGGTGGTAACAATGACATGAGAATCATGTCCAAGAAACATGTGGATGAATCTGGTGAGTCTCAGGGTATTGTGCTGAGTGCTGCAACTTCTATATGGATACCAGTGTCAAGGCAGAGGGTGTTTGATTTCTTGCGTGATGGAAGGCTTAGAGGTGAGTGGGATGTCTTGTCTAGTGGTGGAGCAATGCAGGAGATGTTCCATATTCCTAAAGCACAAGGACAAGGAAACTGTGTCTCTATCCTTCGTGCTAATAATGCTACTAATGGGAACGAGAGCAATGTGCTATATCTGCAAGATTCATGGACTGATGTCTCTGCCTCGATGATTGTGTATTCACCAATGACTATGCAATCCTTGAACTTGGTGATGGCTGGTAGTGATTCTTCATTTGTTTTTCTCTTGCCTTCTGGGTTTGCTATTCTTCCAGATGGTCATTCAAGTGGTGTTGGAACTTTAAGTGATGGCAGTGGCAGTAGCGGCGGTGGTGATGGTGGTGGAAGTGTTGTTACAGTTGGGTTACAAATGCTGCTGAGTAACCTCCCAACAGCTAAGCTGACAATGGAGTCAGTTGAAACTGTTAATGGACTCATCTCATGCACCATTCAGAAGATCAAAGATGCACTTGGAGTTGCATGA	2262	0.4443	MEGHGEMGLIGENFDSGLMGRIRDDEYESRSGSDNFDGASGDDQDAGDDQSQKKKKKKYHRHTPQQIQELEAFFKESPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKEALANPMCNTCGGPAIPGQISLEEHQIRIENARLKDELNRICALANRFLGRPLSSLASPMPLPTPNSGLELGIGRNGAGGSGNFSMSLPMGLDVGDGVMGTPPPTLPGIRSSMGLIGNEVQLERSMLIDVAVAAMDELLKMTQQDSPLWIRSSDGSREVLNHEEYSRVCSYIRPKPTGYVTEATRETGLVIINSLALVDPLMDADRWSEMFPSMIARAVTLDVISSGMGGTRNGALQVMHAEVQLPSPLVPVRQLSFLRFCKQHAEGVWAVVDVSVDIGHNATNGIQFMNCRRLPSGCVVQDMPNGFSKITWVDHSQYDESVVHQLYRPLVNSGIGFGAHRWIATLQRQCECFAILMSPSIQPEDPTAISQAGKRSIMKLAQRMTDYFWSGICVSSACKWDIIHIGGNNDMRIMSKKHVDESGESQGIVLSAATSIWIPVSRQRVFDFLRDGRLRGEWDVLSSGGAMQEMFHIPKAQGQGNCVSILRANNATNGNESNVLYLQDSWTDVSASMIVYSPMTMQSLNLVMAGSDSSFVFLLPSGFAILPDGHSSGVGTLSDGSGSSGGGDGGGSVVTVGLQMLLSNLPTAKLTMESVETVNGLISCTIQKIKDALGVA.	754

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g04937	753	SMART	HOX_1	55	117	IPR001356	GO:0003677
	Seca9g04937	753	SUPERFAMILY	Bet v1-like	515	747	-	-
	Seca9g04937	753	SUPERFAMILY	Bet v1-like	259	490	-	-
	Seca9g04937	753	Pfam	START domain	267	489	IPR002913	GO:0008289
	Seca9g04937	753	CDD	START_ArGLABRA2_like	261	488	-	-
	Seca9g04937	753	CDD	homeodomain	60	113	IPR001356	GO:0003677
	Seca9g04937	753	ProSitePatterns	'Homeobox' domain signature.	88	111	IPR017970	GO:0000981\|GO:0006355
	Seca9g04937	753	MobiDBLite	consensus disorder prediction	1	64	-	-
	Seca9g04937	753	MobiDBLite	consensus disorder prediction	18	32	-	-
	Seca9g04937	753	ProSiteProfiles	START domain profile.	257	492	IPR002913	GO:0008289

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g04937	Seca-Chr9	143315502	143321853	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g04937	1	750	Homeobox Transcription Factor Family	AT3G61150	53.836	0.0	803

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Seca9g04937		START	4.6e-46	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g04937	K09338		-	gmx:100794400	1096.65

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