Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04922 ATGTCTCCGCCGCCGCCGGTGGAAAACAACGGAGACTCCACCACGGCCTTCGCCACGGCTATAGAGTCTCAGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGAGGACCAATCCATCGACGACGTGATTTCTTGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACTGTTTTCGCCAGAGACTTGCTCCCTAAATATTTCAAGCATAACAATTTCTCCAGCTTCGTTCGCCAACTTAATACTTATGGATTCAGAAAAGTTGTACCTGATCGATGGGAATTCTCGAACGAGTGTTTCCGCAGAGGCGAGAAGAGGCTTCTGTGCGAGATTCAACGGCGGAAGATCTCGCCTCCGTCGCCATCGACGACGGCGGCAGTAACGGCCGCGGCAACTGCCACGGTTGCGGTTCCTTCCCCTTTGCCGCTGACTGCGATACCGACGGCGATGCCGATCATATCGCCGTCAAACTCCGGTGAGGAGCAGGTTATATCGTCGAGTTCCTCGCCGTCGCGAGCTCCGGCGGAGCTTCTCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTCCAGTTGAACAAGGAACTCGCGGAGATGAGATCGCTCTGCAACAATATATACACTCTCATGTCGAATTACGCGAACGCTAACAACAATAATAACCAAACGGACGGCGGCAGCAGCGGCGGCGCTCAAGGAAGTAGAGAGTCCGGCATGACGGCGGTGAAGCAGCTTGATTTCATGCCGGTGAAACGGAGCTCCGGCGAGGAGACGGCGACGGAGACAGCGGTGGTGGAGATGAATCCAAAGCTGTTTGGTGTTGCGATAGGAGCGAAGCGAGCGAGAGGGGGCGGTGGAGGAGGTGGAGAAGGAGGAGGAAGTGGTGGAGGAGGGGAGGAAGATACGATGTTGAGCCTGCATCAACCAGGTCCTACGGACGTGAAATCAGAGCCGTTGGATTGTCAGAACCATCAGAACCATCGAGATAATCAACAAACACCTTGGCTAAACCTATGCCGTAGAACCAATCAGAGGGTTTGTAATTGA 1062 0.5424 MSPPPPVENNGDSTTAFATAIESQRSIPTPFLTKTYQLVEDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISPPSPSTTAAVTAAATATVAVPSPLPLTAIPTAMPIISPSNSGEEQVISSSSSPSRAPAELLDENERLRKENVQLNKELAEMRSLCNNIYTLMSNYANANNNNNQTDGGSSGGAQGSRESGMTAVKQLDFMPVKRSSGEETATETAVVEMNPKLFGVAIGAKRARGGGGGGGEGGGSGGGGEEDTMLSLHQPGPTDVKSEPLDCQNHQNHRDNQQTPWLNLCRRTNQRVCN. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04922 353 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 249 IPR027725 -
Seca9g04922 353 MobiDBLite consensus disorder prediction 286 335 - -
Seca9g04922 353 MobiDBLite consensus disorder prediction 223 243 - -
Seca9g04922 353 MobiDBLite consensus disorder prediction 162 187 - -
Seca9g04922 353 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 Coils Coil 180 207 - -
Seca9g04922 353 Gene3D - 23 121 IPR036388 -
Seca9g04922 353 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Seca9g04922 353 FunFam Heat stress transcription factor B-4 23 121 - -
Seca9g04922 353 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g04922 353 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04922 Seca-Chr9 142936011 142937891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04922 23 353 HSF AT5G62020 47.977 6.93e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca9g04922 HSF_DNA-bind 7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04922 K09419 - gmx:100812267 452.595