Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04912 ATGTTGCTCGTGCTTTTCGTTTTCGCGTCCTTCATCACGTGCTTCTGTTCCTTCTACGTTCGCTACTGTTCCGAACGGTACGTGGTTACGGCAACCACCGTTACAACTAACGGCGTCGACCCGGAAGTTCTTGCCACGTGTCCTATCGTGGTTTACTCTGCCGTTAAAAAGGGTCACCGCCACGTGGCAATGCAATGCGCGGTGTGCTTGGGTGAGTTCGGGGATCTCGACGCGCTTCGGTTGTTGCCGAAGTGCAGTCACGTGTTCCACACCCGTTGCATTGACATGTGGCTGTCTTCGCACGTGACCTGCCCCATTTGTCGCGGCGAAATAGCGGTGGAAATTGGGTGCGAAAACGGTGCGTGCCAAGTGTTTGGTGAAAGTTCTGTGAGAAGAATCGATGTTGTGAATGGAAGTGGGGTTTGTGGGAATGTTGATGGGTGCGTTGGGAAGGGTAATGGGTCTTCAAAGGTGGGTGCTTTTGGGGTTTTAGTGAGGTCCCACTCGACGGGTCATTCGTTGGTTGAACCGGAGAAGAGTGTGGATGTGGAGGTGAAAATGCAGATTGTGAAGGATAATGGTGGAAATTTGATGATTGGGATGAAGCGTTCGGTGAGCTACGACGTCGTTTTGAGGATTGAAGAAGTGGGGTCAGGTAAGGATGAAGAAAGGGGTGAAGGTAGCAGCAGAAAGGGTCGGTTTGGATGGGGTTGTTCGAGTGTGACATCACCGAATGCGTCCACCACGTGTCCTGGGATTTCAAGGTTATGGGCTTCTTCTGTTGTGAGAGAAGACAGAGAGTTTAAAGAGAAAACGATTTTTCAAATCGTGTGA 834 0.5084 MLLVLFVFASFITCFCSFYVRYCSERYVVTATTVTTNGVDPEVLATCPIVVYSAVKKGHRHVAMQCAVCLGEFGDLDALRLLPKCSHVFHTRCIDMWLSSHVTCPICRGEIAVEIGCENGACQVFGESSVRRIDVVNGSGVCGNVDGCVGKGNGSSKVGAFGVLVRSHSTGHSLVEPEKSVDVEVKMQIVKDNGGNLMIGMKRSVSYDVVLRIEEVGSGKDEERGEGSSRKGRFGWGCSSVTSPNASTTCPGISRLWASSVVREDREFKEKTIFQIV. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04912 277 Pfam Ring finger domain 65 108 IPR001841 -
Seca9g04912 277 SUPERFAMILY RING/U-box 59 114 - -
Seca9g04912 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 9 127 - -
Seca9g04912 277 SMART ring_2 66 107 IPR001841 -
Seca9g04912 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 113 IPR013083 -
Seca9g04912 277 FunFam E3 ubiquitin-protein ligase ATL6 28 114 - -
Seca9g04912 277 CDD RING-H2_EL5-like 65 108 - -
Seca9g04912 277 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04912 Seca-Chr9 141963645 141964478 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04912 1 203 Rapid Response to Elicitors AT3G05200 33.878 3.03e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04912 K10664 - gmx:102665105 212.231