Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04909 ATGTTTGAGTTTCACCTCAAACACTACCTCTTCACTTCCTTCACATGGCTCCACCTTTTTCTTCTATTCCTTTACCATGTTGATGCACAAGCATCCATGGAGCCAGTTCCCACAGACATCTCACACCACAATTGGGAACCTTCTTTTGCAATCACAGTAGGAGCCATCATTTGTGTCCTTCTCTTCATGGGAATCATCTCAATTTACATCAGAAAATGTGCTGAGTCACGCATCATCATCACCAGAACCAACCCAATTGGTGCTACTAACACAAATTGCCCATGTTCTTGTTCACAAGGCATCAACAAGGAACTCCTCAACACCTTCCCAATTATCTTCTACTCCACCATCAAGGACCTTAAAACAGGTAAAGGACCTTTAGAATGTGCAGTGTGTTTGACAGATTTCAAAGACCAAGACACCCTTAGGTTACTACCTAAATGCAACCATGTGTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCTCATGTGACATGCCCAGTTTGTCGTGCAAATCTGAACCAAGATTCATGCCAAGTTGCCATAACCATCCCAACCCATTTGACCAATGATGAGGAAGGTTCTGAAACCAGAGGTGAAAGTGAAGAGAATGAGATAGAGCCTAACCCAAACCTAAACCAGAACCAGAACCAGAACCAGAACCTGAACCTGGACCCAGTTGTTCATAAAGGTGATCAGGGTAATTGTGATGATGGGGGTGTGTCAAAATCGAATCTTTTGAGGTCAAATTCAACGGGTCATTCGATGGTTGAACCAGTGAAGTGTGTGGAGAGGTACACGCTGAGGTTACCAGAGGATGTGAGAACGTACATTCTAGTGAACCATGAAAGAAGCTGTTCCAACAACAACATAGTGAAGGGGTTATGTTGGAGTGACAATGAAGGGAGCAGCATAGAGAAGGGGATCAATGAAGAAGAAAAAGTGGAAAGGTGGGTGCTGTGTGCGCCACCATTTGTTACGCGTCATGGTTGA 996 0.4408 MFEFHLKHYLFTSFTWLHLFLLFLYHVDAQASMEPVPTDISHHNWEPSFAITVGAIICVLLFMGIISIYIRKCAESRIIITRTNPIGATNTNCPCSCSQGINKELLNTFPIIFYSTIKDLKTGKGPLECAVCLTDFKDQDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAITIPTHLTNDEEGSETRGESEENEIEPNPNLNQNQNQNQNLNLDPVVHKGDQGNCDDGGVSKSNLLRSNSTGHSMVEPVKCVERYTLRLPEDVRTYILVNHERSCSNNNIVKGLCWSDNEGSSIEKGINEEEKVERWVLCAPPFVTRHG. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04909 331 CDD RING-H2_EL5-like 128 171 - -
Seca9g04909 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 178 IPR013083 -
Seca9g04909 331 MobiDBLite consensus disorder prediction 192 206 - -
Seca9g04909 331 Pfam Ring finger domain 128 171 IPR001841 -
Seca9g04909 331 FunFam E3 ubiquitin-protein ligase ATL6 90 177 - -
Seca9g04909 331 SUPERFAMILY RING/U-box 128 177 - -
Seca9g04909 331 MobiDBLite consensus disorder prediction 190 253 - -
Seca9g04909 331 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Seca9g04909 331 PANTHER RING FINGER DOMAIN-CONTAINING 41 180 - -
Seca9g04909 331 MobiDBLite consensus disorder prediction 239 253 - -
Seca9g04909 331 SMART ring_2 129 170 IPR001841 -
Seca9g04909 331 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04909 Seca-Chr9 141885741 141886736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04909 19 325 Rapid Response to Elicitors AT3G05200 36.538 5.32e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04909 K10664 - gmx:100782532 338.961