Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04895 ATGGGGTGCCAGCAACTAGAAAAACCAAAACCAAAATTCAGAAAGGGTTTATGGTCACCTGAAGAAGATAATAAGCTTAGAAACCATATCCTTAAACATGGTCATGGTTGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAAAGTTGCAGACTAAGGTGGATCAACTACCTAAGGCCAGGACTAAAGAGAGGGGTGTTCAGCAAACATGAAGAAGATACAATCTTAACCCTTCACCAAATGTTAGGCAACAAGTGGTCTCAGATAGCACAACAATTGCCTGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAAAGTGGTCAAAGCTAAGGAAACAGATTCTCACAAACAAATTCAGTATGCAAGCTCAAGCTCAGATACAATGGACTCTTCACTCTCTCCCCAGAAACTTGAAACTCAAGATCCTAATTATGGATTGTTGGAAAACATGGAAAAATCTGCAATACACTCTGATCACTCTCTTTCACAGAATTATAACTTTGCTAAAGATGCTTGTCAGAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCAGTGGATCAAGTAAATGGTGGAAGCTCCATAAGTTCAGATGAATCTATGGTATTGGGGAATGGATTTGATCAAAATTCAACTTTCTCAGAAGCTATGATGAATATGTCAGAAGGACAGTTTGGTGATGAGTATCATGATAGTCTAATTCACAATTCAGCCACTGAGGTGTACAATTCACAGCTTAAACTTTCAAGTCAAGTGGATGGAAATGACTTCTTCCATTGTATACCAGGGACTGATTTGTGTAGCAATTTCACCCTCAACAATGATGCAATGTATGTATGA 876 0.3893 MGCQQLEKPKPKFRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTILTLHQMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVVKAKETDSHKQIQYASSSSDTMDSSLSPQKLETQDPNYGLLENMEKSAIHSDHSLSQNYNFAKDACQSSLPKLLFAEWLSVDQVNGGSSISSDESMVLGNGFDQNSTFSEAMMNMSEGQFGDEYHDSLIHNSATEVYNSQLKLSSQVDGNDFFHCIPGTDLCSNFTLNNDAMYV. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04895 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca9g04895 291 SMART sant 67 115 IPR001005 -
Seca9g04895 291 SMART sant 14 64 IPR001005 -
Seca9g04895 291 Gene3D - 15 67 - -
Seca9g04895 291 CDD SANT 71 113 IPR001005 -
Seca9g04895 291 CDD SANT 18 62 IPR001005 -
Seca9g04895 291 PANTHER MYB DOMAIN PROTEIN 55 1 237 - -
Seca9g04895 291 Gene3D - 69 142 - -
Seca9g04895 291 FunFam MYB transcription factor 70 141 - -
Seca9g04895 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca9g04895 291 FunFam MYB transcription factor 12 68 - -
Seca9g04895 291 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Seca9g04895 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca9g04895 291 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca9g04895 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca9g04895 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Seca9g04895 291 MobiDBLite consensus disorder prediction 127 148 - -
Seca9g04895 291 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04895 Seca-Chr9 141373124 141375960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04895 7 197 MYB Transcription Factor Family AT5G52260 55.330 2.85e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g04895 Myb_DNA-binding 9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04895 K09422 - gmx:100803537 479.559