Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04890 ATGGGGGTGAAGAATTTGTGGGACATCCTCGAATCTTGCAAGAAAACGGTTCCCCTTCACCATCTCCAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCAGAGTGTTAGCAAATCGCGCGCCTGTTTGAAGGAGAAAGTGCACCTCAGAGGTCTCTTTCACCGACTAAGAGCACTGATTGCACTGAATTGCAGCGTGGTTCTTGTTGCAGATGGATCAATTCCTGCCATTAAATTATCAACTTATAGGCGTCGCTTAAACATGGGAAAGGAGGTAGCCCAAAATGAAACTAACTTACAGAAAGTGACATCATTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATAAAAGAGGCAAAAGTCTTGGGGATGGCTCTTGGCATCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTCTGAAGTATTATGTGATGGATGTTTCAGTTCTGATTCAGATATATTCCTTTTTGGTGCAAGGAAGGTGTACAGGGATATCTGCCTCGTTAGGAGATGGTGGATATGTTGTTTGTTATGA 573 0.445 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQSVSKSRACLKEKVHLRGLFHRLRALIALNCSVVLVADGSIPAIKLSTYRRRLNMGKEVAQNETNLQKVTSLRRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNSEVLCDGCFSSDSDIFLFGARKVYRDICLVRRWWICCLL. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04890 190 SMART xpgn3 1 97 IPR006085 GO:0004518
Seca9g04890 190 SMART xpgineu 130 190 IPR006086 GO:0004518
Seca9g04890 190 Gene3D - 1 183 - -
Seca9g04890 190 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 178 IPR006084 -
Seca9g04890 190 SUPERFAMILY PIN domain-like 2 180 IPR029060 -
Seca9g04890 190 Pfam XPG I-region 133 179 IPR006086 GO:0004518
Seca9g04890 190 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Seca9g04890 190 CDD PIN_GEN1 2 180 - -
Seca9g04890 190 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Seca9g04890 190 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Seca9g04890 190 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Seca9g04890 190 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04890 Seca-Chr9 141093674 141097023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04890 1 176 Core DNA Replication Machinery Family AT5G26680 26.020 3.83e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04890 K15338 - gmx:100806919 334.339