Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04889 ATGGTTTCCTATAACATTCTCTACCACTTAATCCTTGTTATTAGCTTCCTCAGTTTTGCTACTACTGAGGCACAGGACGACCCATTTTTACTAGATAAAAATTGCTCTAATGACATAATTACCACTGCCAACAGCGCCTCCCAATTGGATGTTAGGACCCTCCTCTCTTCCTTATCTTCTAACGCCACCGGTGACACCCAATTTTACAACGTCACAATCACCGGCTCTGCAGAGTCAGTCTATGGCATGTTCATGTGTAGGGGTGACGTCCCCTCTCAGCTCTGTCAACAATGTGTCAGTATTGCAACCCAGCTGTTATCCTCAGAGTGCTCCTTGTCAAAAGATGCTGTGATCTGGTACGACGAGTGTATGGTTCGGTACTCCAATTCCTCTTTCTTCTCCATTATGAACACAGGGCATGTACGTGGCAGGTGGAACGTCGCCTATATACCAGACTCAATCCTGCAAAAGTTCACGCGTTTATGGTTTTTGACCATGAATGAAACTGCGGATGAAGCAGCCCATACTCCTATTGGTGTCAAGAAGTTTGCCACAGGGAAAGTATCTCTGTCTGAATTTCATACCCTATACTGTCTAGTTCAGTGCACACCAGATTTGTCTCCCAATGATTGCAGAGCTTGTCTAAGTGAAGGGATAAGACACCTTTACCTTTATCCATATGCTATGGGACAAAGTATTCTATTTCCTAGCTGTAATGTTAGGTACGAAATGTACCCTTTCTATCTCTCCAATGTGTCGTCACCAACGGCAGTACTCGTTCCTGAAACAAATGCTTCCCATGCTGATTCAAAATTTTCAGAAGATCCTGTTTATCTTTCCCACAATTGCTCAACTGACAATAATACCTTCACTGCAAACAGCTCTTTCCAAATACACCTAACCACCCTCTTCTCGTACTTGTCTTCCAACGCCAGCAACGGTATTAAATTTCACAAGGTTGATGTGGCGGGCGCAGTGTTTGGCTTCTTCATGTGCCGAGGTGACCTTCCATCGCGCCTCTGCGAACAATGTGTCCTAAACGCAACGCAACGATTATCCTTGGTGTGTCGTTGGATTCAAGAGGCTACAATTTTCTACAGCCACTGCTTGCTTTGGTATTCCCATTCCTTTAACGATTTCTACTTCAATGTGCACCAAAGTCCTGTATTTTCTGAGCTGAACATAACAACCACTTCCAGCCCTAACCAGCAGAAGCAAAGCTTGTTTACTTTTGCATTGTCCAATACGTTGGATAAACTGCGATATGAGGTAGGGGAAAGTGAGGAGAAATATGGAACAAAATCGATAAAATTTAATGACTGGCAAACCCTTTATACTCTTGCTCAATGTACTCAAGATTTGTCTAGTGATGATTGTTGGAGATGTCTGGCAGATGTGATCGGAACAGAAATTCCATGGTCTCGTTTGGGAAGCGTTGGGGGAAGAGTTATGTATCCTAGCTGCAATCTAAGGTTTGAATTGTTCCAATTTTACAGGGATGCTGACAACCCGCTCGGTCCAAGTCCAATTACCCCTTCTCTATCAGGACATACTACTGCACTTGAAGGCTACTATTTGCTAAAGCGAAATGCAAGAAAGAGTTGCAATACTATTCTTATAGAAAATTTTGGTCATGAAAGTGCCACTTTAGAGCCATTGCAATTTGATTTAGCTGTAATCGAAGTAGCAACTAACAACTTTTCAAACGAGAATAAGATTGGAAAAGGTGGATTTGGAGAAGTATATAAGGGCATTCTATTTGATGGACGACAAGTAGCCGTAAAGAGACTATCAAGAAGTTCTAGGCAAGATTTCCAACGACAAATGTCATTAAGTTGGGTTGAACGTTACAACATTATAGGAGGGATTGCTCGAGGAATTGTTTATTTACATGAACATTCTCGACTCAAAGTTATACATCGTGATCTCAAACCTAGTAATGTTCTATTAGATGAAAATATGATTCCAAAAATTTCAGACTTTGGTTTGGCAAGAATTGTTGAAATCAATCAAGACCAAGGAAGTACAAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGGCAATTTTCTGAGAAATCAGATGTTTTTAGTTTTGGAGTCATGGTTTTAGAGATTATCACTGGGAAAAAGAATCTAAGTTCATATGAACCACATCGTGTTGCAAATGGCCTCTTGAGTTATGTTTGGAGGCAGTGGAGGAATCAAACACCTATCAGTATATTGGACCCAAATATAGAAGAAAATCATTCCAAAACTGAAGTCATTAAATGCATTCAGATTGGTTTATTATGTGTTCAACAGAACCCTGATGCTAGACCTACAATGGTGATGGTTGTTTCATATTTGAGCAGTTATTTCATTGAATTGCCAATTCCACAAGAACCTGCATTTTTCTTGTCTGGTAGAATGGATCCAAGAGCATTTGCACAGGAATCAAGTTCTACCCAATCTATCGATAGTTCCACATTATTCTCTGTCAATGAAATTACTACGAGTACTTTTCTTCCTCGTTAG 2535 0.4055 MVSYNILYHLILVISFLSFATTEAQDDPFLLDKNCSNDIITTANSASQLDVRTLLSSLSSNATGDTQFYNVTITGSAESVYGMFMCRGDVPSQLCQQCVSIATQLLSSECSLSKDAVIWYDECMVRYSNSSFFSIMNTGHVRGRWNVAYIPDSILQKFTRLWFLTMNETADEAAHTPIGVKKFATGKVSLSEFHTLYCLVQCTPDLSPNDCRACLSEGIRHLYLYPYAMGQSILFPSCNVRYEMYPFYLSNVSSPTAVLVPETNASHADSKFSEDPVYLSHNCSTDNNTFTANSSFQIHLTTLFSYLSSNASNGIKFHKVDVAGAVFGFFMCRGDLPSRLCEQCVLNATQRLSLVCRWIQEATIFYSHCLLWYSHSFNDFYFNVHQSPVFSELNITTTSSPNQQKQSLFTFALSNTLDKLRYEVGESEEKYGTKSIKFNDWQTLYTLAQCTQDLSSDDCWRCLADVIGTEIPWSRLGSVGGRVMYPSCNLRFELFQFYRDADNPLGPSPITPSLSGHTTALEGYYLLKRNARKSCNTILIENFGHESATLEPLQFDLAVIEVATNNFSNENKIGKGGFGEVYKGILFDGRQVAVKRLSRSSRQDFQRQMSLSWVERYNIIGGIARGIVYLHEHSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQGSTNRIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGKKNLSSYEPHRVANGLLSYVWRQWRNQTPISILDPNIEENHSKTEVIKCIQIGLLCVQQNPDARPTMVMVVSYLSSYFIELPIPQEPAFFLSGRMDPRAFAQESSSTQSIDSSTLFSVNEITTSTFLPR. 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04889 844 ProSiteProfiles Protein kinase domain profile. 499 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04889 844 SUPERFAMILY Protein kinase-like (PK-like) 550 824 IPR011009 -
Seca9g04889 844 FunFam Cysteine-rich receptor-like protein kinase 25 388 497 - -
Seca9g04889 844 FunFam Cysteine-rich receptor-like protein kinase 25 142 247 - -
Seca9g04889 844 Gene3D Transferase(Phosphotransferase) domain 1 608 795 - -
Seca9g04889 844 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 13 253 - -
Seca9g04889 844 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Seca9g04889 844 Pfam Protein kinase domain 606 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04889 844 ProSiteProfiles Gnk2-homologous domain profile. 278 378 IPR002902 -
Seca9g04889 844 ProSiteProfiles Gnk2-homologous domain profile. 391 497 IPR002902 -
Seca9g04889 844 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Seca9g04889 844 Pfam Salt stress response/antifungal 176 244 IPR002902 -
Seca9g04889 844 Pfam Salt stress response/antifungal 41 129 IPR002902 -
Seca9g04889 844 Pfam Salt stress response/antifungal 283 375 IPR002902 -
Seca9g04889 844 Pfam Salt stress response/antifungal 399 493 IPR002902 -
Seca9g04889 844 Gene3D Transferase(Phosphotransferase) domain 1 556 607 - -
Seca9g04889 844 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 131 - -
Seca9g04889 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Seca9g04889 844 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Seca9g04889 844 FunFam cysteine-rich receptor-like protein kinase 10 599 796 - -
Seca9g04889 844 SMART serkin_6 567 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04889 844 Gene3D - 145 247 IPR038408 -
Seca9g04889 844 Gene3D - 276 377 IPR038408 -
Seca9g04889 844 Gene3D - 391 497 IPR038408 -
Seca9g04889 844 Gene3D - 29 132 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04889 Seca-Chr9 140968532 140973849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04889 273 844 Receptor kinase-like Gene Family AT4G23140 37.685 2.82e-136 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g04889 Pkinase 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04889 - - gmx:100798426 1034.63