Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04797 ATGACACAAGCTCTTCGCTACTTCAAAGAGTTGACAGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAATAGATATAAACTCACAACTTCAGGTCAACCTTTTGTTCTTGATCCACACAGTAATGGACTCCATCAGTATAGAACAGTTTCCTTGATGTATATGTTTTCTGTGGATGGTGAGAATGATGAAATTCTGGGACTTCCAGGTAGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCTAATGTTCAGTATTACTCTAGTAAAGAGTATTCACGCCTAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTCCAGGGCAATCATGTGTTGCTGTGTTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATTTGTAATGAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTTGTCTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGTGGTCTTAAAAAAAGTTGCTCTAGTTTTGATGGTTATTGCATGGGGCAAGTTTGCATGTCAATAACTGAGGTAGCATTCTATGTCATAGATGCTCACACATGGGGTTTCCATGAGGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCAGGGAGGGCATTTATGTCCCACAACATGTGCTTTTGTGGAAACATTACTCAGTTCTGCAAAACTGATTATCCCTTAGTACATTATGCTCTTATGTTTGGGTTGACAAGTTGTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATGTATTAGAGTTTTTCCTGCCTCCTCAGATCACAGACTTTAATGAACAAAAAACTTTGTTGGGATCCATATTGGCAACAATGAAGCAACATTTCCAGAGTCTTAAGGTTGCTTCTGGTGTTGAACTTGAAGAGGATGGTTCAATTGAAATTATAGAAACAATAAATGGAAGAGTTCGTTTGAGCCTTGAATCTATTCCAATTACCTCATCTGCTAAATCACCACCTAAACATGATGCCTCACCAAATATAGGGGAGGGGGTGCCATTAGATCCATCAGAACAGCAATTAATGACATACTTTGATGACATAAATGATGGAGGGAATCTTGGTGATAATGTAGGTGGAAGCATAGATAAGATCTCTTCCTTAGAGAACAAAATCATAAAGCAACCATCACAGAGAAAACGCGGAAAAGCTGAGAAATCCATCAGTCTTGAAGTTCTGCAACAGTATTTCAGTGGTAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTGTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCAGTTCATGGTGCTGAAGGAGCATTTGGTTTGAATTCCCCAAGTACTAGTTCATTTCCCATTGCTGTTGGTTCCTTCACTGAACCATCTACTTCAAACAAGTTTGACCATCAAGCCTCATTAAGCATTGGACCATCAGAACCTAATATGAATGAAAATGATTTGGATGCTTCTAAAGTATCAGCAAAGAGCAGACAGGATGGAATTGAAGATCAATTTCTAGGAGCAAGGACACAAAGTCCTGAGAAAGTGATCAATGACAAAGGTGGATCCACTCAGGAGGTTGGCACTAAAGGCTCAAACAAGTTTAGGATTGGGAGTGGCTCAAGTGAAGGCAGTGCAAATCCTACTCCTCATGGTAGCCCCCCAAATGAAAGTTCTCCTCCAAAAGATATATTTAATATAACATGCAACAGTGAGCAATATTTTGTGTTAAGGGGATCACTGGAGCCAACACTGCAGCCAACTAGTACCTTGAACAGTGCAACTGCATACCCTATGCCTAATGTTGTGGTGACAGAACCTCAAGAACCATTTGGAGGATTGCTAATTGAGGGTGCTGATAGTTCTAAAGACTTGAGAAATCTGTGTTTTTCAGCAGATGCTGTTTTGGAGAATCAGGTTCCAGATGCTTGTGGGATTAATCCTCCATGTTCTGAATTGGCTCCTATCCAACACATGGATACTCTTAATAACACTATGACACCTTTTGCAGCAAGGAAAGAGATGAAGACTGTGACTATTAAAGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTGAGAACTGTGGCATTGTGGAACTAAAAGAAGAGATTGCCAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTATCTGGATGATGATCATGAATGGATTTTGGTAGCCTGTGATGTAGACCTGCAAGAGTGCATGGACGTTTTAAGATCATCAGGCAGCAACATTATAAGGCTTGTGGTGCATGATGTAGTGTCCATTCTGGGAAGCTCTTGTGAGAGCTCTGAGGAGTGA 2574 0.4083 MTQALRYFKELTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHAQHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFMSHNMCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGNDDYVLEFFLPPQITDFNEQKTLLGSILATMKQHFQSLKVASGVELEEDGSIEIIETINGRVRLSLESIPITSSAKSPPKHDASPNIGEGVPLDPSEQQLMTYFDDINDGGNLGDNVGGSIDKISSLENKIIKQPSQRKRGKAEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSPSTSSFPIAVGSFTEPSTSNKFDHQASLSIGPSEPNMNENDLDASKVSAKSRQDGIEDQFLGARTQSPEKVINDKGGSTQEVGTKGSNKFRIGSGSSEGSANPTPHGSPPNESSPPKDIFNITCNSEQYFVLRGSLEPTLQPTSTLNSATAYPMPNVVVTEPQEPFGGLLIEGADSSKDLRNLCFSADAVLENQVPDACGINPPCSELAPIQHMDTLNNTMTPFAARKEMKTVTIKATYREDIIRFRVSENCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWILVACDVDLQECMDVLRSSGSNIIRLVVHDVVSILGSSCESSEE. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04797 857 SMART PB1_new 762 844 IPR000270 GO:0005515
Seca9g04797 857 SUPERFAMILY CAD & PB1 domains 759 847 - -
Seca9g04797 857 PANTHER PROTEIN NLP8 1 855 IPR045012 GO:0003700
Seca9g04797 857 MobiDBLite consensus disorder prediction 383 403 - -
Seca9g04797 857 Gene3D - 759 843 - -
Seca9g04797 857 ProSiteProfiles RWP-RK domain profile. 444 525 IPR003035 -
Seca9g04797 857 MobiDBLite consensus disorder prediction 547 574 - -
Seca9g04797 857 Pfam RWP-RK domain 457 505 IPR003035 -
Seca9g04797 857 MobiDBLite consensus disorder prediction 547 650 - -
Seca9g04797 857 ProSiteProfiles PB1 domain profile. 762 844 IPR000270 GO:0005515
Seca9g04797 857 Pfam PB1 domain 762 843 IPR000270 GO:0005515
Seca9g04797 857 CDD PB1_NLP 763 843 IPR034891 -
Seca9g04797 857 MobiDBLite consensus disorder prediction 601 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04797 Seca-Chr9 135756934 135762811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04797 131 857 NLP Transcription Factor Family AT4G24020 52.717 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca9g04797 PB1 4.5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04797 - - gmx:100780901 1412.51