Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04788 ATGGCTCCAAAGCAGCCAAATACGGGTCTTTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAATTGGCTCCACGACCCTCCGATCGCAAGGGGAAAACAAGCAAACGTGTGCACTTTGTAAGGAACCTCATCCGGGAGGTTGCTGGTTTTGCTCCTTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAAGATAAGAGAGCACTGAAAGTTGCCAAGAGAAAGCTTGGAACCCATAAACGTGCAAAGAAGAAGCGTGAGGAGATGTCCAATGTTCTCCGCAAGATGAGGTTGCACTTCATTCTTTAA 321 0.4611 MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRLHFIL. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04788 106 FunFam 60S ribosomal protein L36 1 104 - -
Seca9g04788 106 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca9g04788 106 PANTHER 60S RIBOSOMAL PROTEIN L36 1 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca9g04788 106 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Seca9g04788 106 Gene3D 60S ribosomal protein L36 1 104 IPR038097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04788 Seca-Chr9 135281220 135282408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04788 1 101 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 84.158 1.76e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04788 K02920 - csav:115702845 201.83