Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04778 ATGCCAGTTGCAAAACCCAAGGCTTCTACCGCTACAGATGTCATGAAAACAGAAGACAAAATAGATACTATAATCAAACAAGAAGTTGGCAGAGAATCTTTGCTTTATTTTCCAAGGGCCCGTGAAAGCTCTATACAGTGGATTCCATTACTCCATACTTTAGATCAGCCTGGTGTTAGCAATTCTTATTCAGAATTTCTAGGATGGCCTTTTCTCTTTCCTTTGAAGGTTCAGTTGCAGAAGTGTGAGAAGTGTCCTCAAGAGTTTTGCTCCTCCATTAATTATAGAAGGCATACACGTGTCCACCACCGGTTCAAAAAGCTTGATAAGATAGCAGCTTGTTTGTTTTCCTTGCCGTCTTCAATTTTTCCTGATGCTGTTTACACATTTCAGGATTCTACAAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGGTGCTGGAGGATGTTCCAGGGTCTTCAATTATAAAAGCTCTGATGTCACTTACTGTAAAACAAGGATTTCCTTTACTTCCGCAGTATTACTTGAGTGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTGAACCTTCCAGTTTTCCTATATCTTCCCAGGAGTTGTTCAGTATACTTGATGATGCTAGTGAAAAAACATGTTTATGTGCTACAGAAGTGTCAACGCAAAGATATATTTTTGATGGAGATGCTGGAAAAATTGGTCTTGAACCAAGAAATGTAATTGCTTGCACAAGTTTCTTGCTAGAACAGAAACTGGTGAAGGCGTGGTTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAGCAATTGGTGGAAGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGCTAGGGAGAAAAGACACAAGGAAGAGGCAGAAACTAAAGGGAATATTGACAGTAAAGTAAAGGTTTTATCTAAGGAACAAAGACACAAGGATGAGGCAGAAATTAAAGGGAATATTGATAGTAAAGTAAATGCTTTATCTAAGGAACAAAGACACAAGGAAGAGGCAGAAATTAAAGGGAGTATTGACAGTACTGTAAAGGTTTTTTCTAGGGAAAAAAGAAACAGTGATGAGGAAGAAATTAAAGGGACTATTGACAGTACAGTTAAGGCTTTCTCAGAAGCAGAAGCATCCTTGGATACATATAATTTTGCAGATAATGCTCCTTCACATGTTCCTTTCCAATGCCCTGACACTAATGAAGGAATAGATGGGGATACTCAGTCTGGGCATGATTTTGGCACTGATCAGAATATTGAGAATTCTCCAATCCCAAAACTTGAGGTCATTCAGAAGCATGAAACCCCCCATGATCAAAGGGAAGCTGCCATAGTTAATGGTAGTAAAGCATGGAGTCAAAAGCCTAAACCAGAAATTGACAGGGTGGTTTTAAAACCCATAAAAGAGAAAGAGCCAGACTTCGTTAAGAATCGTGAAGTTTTGATTGGATCCATATCTATTAATCTTGGCAATTGCAGTCAATCAGAGGGTAATGTGGTGGCATCTAGAGAGAACTGCATGGTTGAGAACGTGGCCAAGCAGAACAGTTCACAGACTAAACCAATGAAACCTGATTTGGTCATTAGTGGCAACAATCCAGTAACAGTTAAGATTTCGAAGACAGTTAGTCGGCTTGAAACTGAAGATCCATTTCCGGTTCAAAGTGGTGGGACAGAAGTTGGTGCAGTTTATGGACATGGAGATTTTCAAAACTTGTCAGGGCCAAGTCGTTTAAGGTTGAGTATAGATGATAGTGATATTGGTTTTGAAAACAATATCTCCCATTTAGGAGGTAGACTTAATCTGGGAAGCTTACGGTTATCCAGCCATGCTGCAAAAGCCTTTCTTGCAAAAAGTCTCGAGTTTGAATCTTATGGATGGAAAAATTCTTCTTTGAGAGTGTTACATGATGTGGATGTTCCGGGAGGGTCTCCGGTGAAGGATACATGTGGTTTAAACAAAAAAAACAGAAGATGGAAAGAAGCCCTCTCATCAGATCATGTGAAATTGGTTGTTTCCCTTGACTCTGAACCTCCTGGGTGCGAGGAGATAGCAGCATGTCAATCTTCTGATCTCGACAGATGCAACATTCTGGCAAATGCAGAGAACAGGCTGCCTGCAACCTCCGGAGTTTCTAAATCCAAACCCAGAATGAAGTCCAAAAAGAGAACCAAGACATAA 2286 0.4033 MPVAKPKASTATDVMKTEDKIDTIIKQEVGRESLLYFPRARESSIQWIPLLHTLDQPGVSNSYSEFLGWPFLFPLKVQLQKCEKCPQEFCSSINYRRHTRVHHRFKKLDKIAACLFSLPSSIFPDAVYTFQDSTKTRDLLGAYWDKLSVEEAKEVVSFENVVLEDVPGSSIIKALMSLTVKQGFPLLPQYYLSAGAALLDIVQSEPSSFPISSQELFSILDDASEKTCLCATEVSTQRYIFDGDAGKIGLEPRNVIACTSFLLEQKLVKAWFADKDAEALRCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREKRHKEEAETKGNIDSKVKVLSKEQRHKDEAEIKGNIDSKVNALSKEQRHKEEAEIKGSIDSTVKVFSREKRNSDEEEIKGTIDSTVKAFSEAEASLDTYNFADNAPSHVPFQCPDTNEGIDGDTQSGHDFGTDQNIENSPIPKLEVIQKHETPHDQREAAIVNGSKAWSQKPKPEIDRVVLKPIKEKEPDFVKNREVLIGSISINLGNCSQSEGNVVASRENCMVENVAKQNSSQTKPMKPDLVISGNNPVTVKISKTVSRLETEDPFPVQSGGTEVGAVYGHGDFQNLSGPSRLRLSIDDSDIGFENNISHLGGRLNLGSLRLSSHAAKAFLAKSLEFESYGWKNSSLRVLHDVDVPGGSPVKDTCGLNKKNRRWKEALSSDHVKLVVSLDSEPPGCEEIAACQSSDLDRCNILANAENRLPATSGVSKSKPRMKSKKRTKT. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04778 761 MobiDBLite consensus disorder prediction 741 761 - -
Seca9g04778 761 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Seca9g04778 761 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 131 758 - -
Seca9g04778 761 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Seca9g04778 761 MobiDBLite consensus disorder prediction 303 330 - -
Seca9g04778 761 MobiDBLite consensus disorder prediction 316 330 - -
Seca9g04778 761 Coils Coil 277 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04778 Seca-Chr9 134799670 134809770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04778 19 715 C2H2 Transcription Factor Family AT4G25610 33.523 8.18e-98 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g04778 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04778 - - gmx:100809067 738.799