Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04771 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAACCAAGAAGAAAGCAAGTAAGGAAAGTTTTATAGACACATTACACCGAAAGTTTAAAATCCCATCTGAGGCTAAACTAAGCAGTAGATCTGGAGTATCTGGTAGACATTGCAATGACACAATTTCAGAGATGGGGGCACGGTCTCCTTCTGATTCAAGATCTCCTTCGCCTTCCAAAGTGGCAAGGTGTCAAAGTTTTGCCGAAAGGCCTCGTGCTCAGCCACTACCACTTCCTGGTCTGCACCCATCAACTATATGCCGAGCAGATTCTGAAATTAGCATATCATCTAAATCAAGACATGAAAAGGGCTCCAAACCATCATTGTTTTTGCCGCTGCCAAAACCTGCATGCATGCGTGGTAGGCTGAACCCTGCTGATTTGGATGGAGATCTGGTCACTGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTAGACTCTAGCAATCGCAGTCCTCTAGCAACTGACTCTGAGGCTGGAACCAGAACTGCTGCAGGCAGTCCTTCCAGCTTAATGCTCAGGGATCAATCATCTACTGTTTTCCAAGTAAATTCAAGGGAAGTAAAAAAGCCAGCAAACATTCTGGGTAATCATATGTCTTCTACTTCACCAAAACGGAGGCCTCTAAGCAACCATGTTTCAAATCTGCAGATTCCTCCTCATGGTGCCTTCTATAGTGCTCCTGACAGTTCCAGATCTAGTCCATCAAGAAGCCCTTTGAGAGCATTTGGCACAGAACAGGTGTTGAATTCTGCTTTTTGGGCTGGAAAGCCGTATTCAGAGGTAAATTTAGTTGGATCTGGGAACTGCTCAAGTCCAGGTTCTGGTCACAATTCTGGCCACAATTCAATGGGAGGAGACATGTCAGGACAGTTATTTTGGCAACCAAGCAGGGGTAGCCCCGAGTATTCTCCTGTACCAAGTCCCAGAATGACAAGCCCTGGTCCAAGCTCTAGGATTCAAAGTGGAGCTGTTACACCTATTCATCCCAGAGCTGGGGGAACACCTATTGCTGAGTCACAAACAGGATGGATCGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTTCCTCCTTTAGCAGTCACCAATCCCTTGCCTTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTTTGCCAAGAAGTCCAGGAAGGGCAGACAACCCAATGAGCCCTGGTTCGCGTTGGAAAAAAGGAAAGCTGCTTGGCAGGGGCACATTTGGTCATGTCTATGTTGGCTTCAATAAGGAAAGTGGTGAAATGTGTGCAATGAAAGAGGTAACTCTGTTTTCAGATGATGCCAAGTCTAAGGAAAGTGCTAAGCAATTAATGCAGGAAATTACCTTGTTAAGCCGTTTACGGCATCCAAATATTGTGCAGTATTACGGTTCTGAAACAGTTGGTGACAAGCTTTACATATACCTTGAGTATGTAGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTATCAGGACTTGCTTATTTACATGCTAAACATACTGTCCACAGGGACATTAAAGGAGCAAATATACTAGTCGATACTAATGGACGGGTCAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACGGGGCAATCATGTCCGTTATCATTCAAGGGAAGCCCTTATTGGATGGCCCCTGAGGTTATAAAGAACTCTAATGGGTGCAACCTTGCTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAGCCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCATCTCTCTAGTGAAGGAAAGGATTTTGTTCGGAAATGTCTACAACGTAATCCACACCATCGCCCTCCAGCCAGTGAATTATTGAACCACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCCAGGTCCAGAAGCTTCAGACCCTGTATCTGAGATTGCACAAGGAGCTAAAGCCCTGATAAATTTTCAGGGCATTGGACAAGGAAGGAATCTTTCTTCGTTGGATTCAGATAGGCTTTCTCTTCATTCTTCTAGGGTTTTGAAAACTAATCCTCATGCAAGGTCCCTCTCTTTCTCCCTCCCTCCCTCCCCCTCCCCCTCTCTTTCTATCACACACACACACATACTGCGACATTGCCAATGGTGGTCTGAAATTATTTTATTAATCTCCAGTGAAATCCATATTCCAAGGTATATATCTTGCCCCGTATCTCCCATTGGAAGCCCACTTTTGAGGCCAAGATCACCACAGCATATAAATGGAAGAATGTCTCCCTCTCCAATATCTAGCCCTCGGACTGCTTCTGGTGCTTCTACGCCTCTCAGTGGTGGTAGTGGTGCCATTCCATTTAGTAATCACTTAGTTTACTTTCAAGAGGGTCTTGGAAGCTTGCCAAAATCTGCAAATGGTGTCTACATTAGTGGTCCTGCTCATCTTGACAAAAATGTTGACATTTTTCGGGGAATGCAAAAGACATCTCACATTTCATCAGAACTGGTTCCCAGTGAAAATGAAGTTCTGGGGAAGCAGTTTGCAAGGCCTCCTCAAGATGAGCCATATGATGTTCAATCAGTCTTGGCTGATCGTGTTTGCAGGCAGCTGCTGGGGGATCATGTGAAGAGTAACCCATCCCTTGATCTAAGTCCCAACTCCTCTTTGCTCAGCCGGACAAATGGTTTATGA 2817 0.4469 MPSWWGKSSSKETKKKASKESFIDTLHRKFKIPSEAKLSSRSGVSGRHCNDTISEMGARSPSDSRSPSPSKVARCQSFAERPRAQPLPLPGLHPSTICRADSEISISSKSRHEKGSKPSLFLPLPKPACMRGRLNPADLDGDLVTASVSSESSADSDEPVDSSNRSPLATDSEAGTRTAAGSPSSLMLRDQSSTVFQVNSREVKKPANILGNHMSSTSPKRRPLSNHVSNLQIPPHGAFYSAPDSSRSSPSRSPLRAFGTEQVLNSAFWAGKPYSEVNLVGSGNCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPIAESQTGWIDDGKQQSHRLPLPPLAVTNPLPFSHSNSAATSPSLPRSPGRADNPMSPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKHTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSSEGKDFVRKCLQRNPHHRPPASELLNHPFVKCAAPLERPIPGPEASDPVSEIAQGAKALINFQGIGQGRNLSSLDSDRLSLHSSRVLKTNPHARSLSFSLPPSPSPSLSITHTHILRHCQWWSEIILLISSEIHIPRYISCPVSPIGSPLLRPRSPQHINGRMSPSPISSPRTASGASTPLSGGSGAIPFSNHLVYFQEGLGSLPKSANGVYISGPAHLDKNVDIFRGMQKTSHISSELVPSENEVLGKQFARPPQDEPYDVQSVLADRVCRQLLGDHVKSNPSLDLSPNSSLLSRTNGL. 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04771 938 MobiDBLite consensus disorder prediction 797 820 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 380 398 - -
Seca9g04771 938 CDD STKc_MEKK1_plant 411 668 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 210 229 - -
Seca9g04771 938 Gene3D Transferase(Phosphotransferase) domain 1 410 683 - -
Seca9g04771 938 ProSiteProfiles Protein kinase domain profile. 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04771 938 MobiDBLite consensus disorder prediction 286 313 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 286 414 - -
Seca9g04771 938 SUPERFAMILY Protein kinase-like (PK-like) 410 805 IPR011009 -
Seca9g04771 938 SMART serkin_6 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04771 938 FunFam Mitogen-activated protein kinase kinase kinase 410 693 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 33 229 - -
Seca9g04771 938 Pfam Protein kinase domain 413 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04771 938 MobiDBLite consensus disorder prediction 145 201 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 919 938 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 790 820 - -
Seca9g04771 938 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 59 681 - -
Seca9g04771 938 MobiDBLite consensus disorder prediction 921 938 - -
Seca9g04771 938 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Seca9g04771 938 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04771 Seca-Chr9 134630025 134635641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04771 4 936 MAP Kinase Kinase Kinase AT1G63700 56.777 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca9g04771 Pkinase 3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04771 K20717 - gmx:100792783 1503.8