Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04725 ATGTCGTCGCCGGGGTTCACTGGCGGTGGTGGAGCATCGGAGTTTTTCGCCGGCAGATCTATTCCGGCGGCGATGGCGGCAACCTCCATGAACAACCCCATCACCACTCCTTCCGTCACCAACAACCACCTTCATACCTCTCTCTACCGAACCCAACACCAACACCAACAGCAACAACAACTCCCTCCAATCTTTCTAGATCCTTCTTCCCAGATTCTCCACCAGTGCCAAACACCAACCCTTAAACGCACCCTAGCAGAATTCCAAACCCAACACCAACACAACCAAAACTTCAACAACAACACCAACAGCCTTAACCATAACAATCACCACGTCCTTTCAAGCCTTCTACTTCGTTCCGTGAAACCAAGACCAACAACAACAACTTTTCACCACACTTCTTCTCCTTTGGAATTTTCCGTTCCTGAATTACAAAACCCCTTGAGTTTTCATCAAACGCAGCGTTTAGGTGTGCCTTTGCTTCACCAACTTCGCCCTCAACCCATTAACCTCCCCAACAACGTGACCTTACCCATGACCAACACGATCCTCCCGAATAGTAATTTTCAATACCGGACCTCCAATTTGGGTCAGGCTCTGAACCGGGTTCAGACCGCTGAACCGGAAAAGAAGATCATGGACCAACGGCTTCAGGATTTGGAGAAGCAGCTTCTAGAAGATAACGACGAAGAGGGAGAAGCTGATGCTGCTTCTGTTATAACCACCAGTGAGTGGTCAGAGACGTATCAGAACCTGATCGGGTCGGGTCCGGCTCCGAATCAGAAACACGCTTCATCATCGCCAACTTCGTCTACAACGTCTTCGACTTCTTCTTCATTTTCTGCGGCTTCACCTGCTTCGGTGTGCTCCAAACAGACCCTAATGGAAGCCGCATCTGCAATCGCCGAAGGGAAAAACGACGTCGCTGCGGAGATCCTGGCCCGTTTGGCGCAGGGTCCGAACCCGAACGGGAATTCGGATCAGCGGTTAACCGATTGCATGGTTTCGGCTCTGAAATCGCGGATGAACCCGGTGGAAAATCCTCCACCTGTGGCGGAGCTATTCGGCAGGGAACACGCTGAGTCAACTCAGTTGCTCCTTGAGAACTCGGCGTGCTTCAAGTTTGGTTTCATGGCTGCGAATCTCGCGATTATCGAAGCTGCATTTGAGGAGAACGCGAACGTGAACGGGAAAGGGTTCTGCGTGGTGGATTTTGATATTGGACAGGGGAAGCAGTACATGCACCTCCTCCACGCGCTCTCTGCGCGTGGCCAGAACGGGAAGGTGATGCCGACGGTGAAGATCGCGGCGATGGCGGATAACGGCGGCGAGGATAGGGTTAGAGCAGTGGGGGAGATGCTGAGTCGACAAGCTGAGAGGTTGAGGATCGGGTTCGAGTTTCGTGTGGTGCCAGTGACTCAGAAACTCGCCGAGTTAACTCGCGAGTCGTTGGGTTGCGACCCAGATGAGGCCCTCGTGGTGAACTTTGCGTTCAAGCTGAATCGTATCCCAGATGAGAGCGTGTCAACAGAGAACCCTCGCGACGAGCTTCTGAGGCGCGTGAAGAAACTCGCGCCAAGCGTGGTTACCATAGTGGAGCAAGATATGAACGCAAATACGGCGCCGTTTTTGGCTCGCGTGGCTGAGTCATGGTCTTATTACGGTGCTCTGTTCGACTCGGTTGAGTCCGTGTTGGGGAGGGACAACCCGGACCGAGTCAGGGTGGAGGAGGGCCTGAGTCGGAAGGTATGTAACTCGGTGGCTTGTGAAGGAAGGGATCGCGTGGAACGCTGTGAAGTGTTTGGGAAATGGCGCGCACGCATGAGCATGGCGGGGTTCCAGCTGAAACCGCTGAGTCAAAACCTGGCCGAGTCAATTAAATCGCGACTCACAACTGGGAACAACCGAGTCAACTCGGGACTCACCGTGAAAGAAGAAAACGGTGGGATTTGCTTTGGTTGGATGGGAAGGACACTCACCGTCGCATCTGCTTGGCGTTAA 2001 0.5327 MSSPGFTGGGGASEFFAGRSIPAAMAATSMNNPITTPSVTNNHLHTSLYRTQHQHQQQQQLPPIFLDPSSQILHQCQTPTLKRTLAEFQTQHQHNQNFNNNTNSLNHNNHHVLSSLLLRSVKPRPTTTTFHHTSSPLEFSVPELQNPLSFHQTQRLGVPLLHQLRPQPINLPNNVTLPMTNTILPNSNFQYRTSNLGQALNRVQTAEPEKKIMDQRLQDLEKQLLEDNDEEGEADAASVITTSEWSETYQNLIGSGPAPNQKHASSSPTSSTTSSTSSSFSAASPASVCSKQTLMEAASAIAEGKNDVAAEILARLAQGPNPNGNSDQRLTDCMVSALKSRMNPVENPPPVAELFGREHAESTQLLLENSACFKFGFMAANLAIIEAAFEENANVNGKGFCVVDFDIGQGKQYMHLLHALSARGQNGKVMPTVKIAAMADNGGEDRVRAVGEMLSRQAERLRIGFEFRVVPVTQKLAELTRESLGCDPDEALVVNFAFKLNRIPDESVSTENPRDELLRRVKKLAPSVVTIVEQDMNANTAPFLARVAESWSYYGALFDSVESVLGRDNPDRVRVEEGLSRKVCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQNLAESIKSRLTTGNNRVNSGLTVKEENGGICFGWMGRTLTVASAWR. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04725 666 ProSiteProfiles GRAS family profile. 281 666 IPR005202 -
Seca9g04725 666 Pfam GRAS domain family 291 666 IPR005202 -
Seca9g04725 666 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 255 654 IPR005202 -
Seca9g04725 666 Coils Coil 210 230 - -
Seca9g04725 666 MobiDBLite consensus disorder prediction 250 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04725 Seca-Chr9 131934547 131936547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04725 54 666 GRAS Transcription Factor Family AT5G52510 49.051 3.57e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca9g04725 GRAS 1e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04725 - - gmx:100788551 780.015