Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g04716 | ATGTTTTCCCCCTTTGGAAAGATCGTTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGTGGAGAACCTCGCGGTTTTGCGTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGGAAGTTAGCTTGTGGCAGGCCATTGGTGGTTCGTCTTGCTAGTGAGAAGTACATGTTGGAAACAGCTGATAGCTCTACAAAAGCAGCAGGTGAAGGACACAAGATGCATCTCACTGGTGGTGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAATAAATTGAAATCTTTAGAGGAGGAGAGCTCTAGGAAGAAGCAGAAACAAAGTGACAATATTTCTTGA | 378 | 0.4471 | MFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGKLACGRPLVVRLASEKYMLETADSSTKAAGEGHKMHLTGGGMGQTSRSAKIAAIKNKLKSLEEESSRKKQKQSDNIS. | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g04716 | 125 | Gene3D | - | 1 | 75 | IPR012677 | - | |
| Seca9g04716 | 125 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 1 | 63 | IPR000504 | GO:0003723 | |
| Seca9g04716 | 125 | Coils | Coil | 99 | 125 | - | - | |
| Seca9g04716 | 125 | MobiDBLite | consensus disorder prediction | 72 | 125 | - | - | |
| Seca9g04716 | 125 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1 | 56 | IPR000504 | GO:0003723 | |
| Seca9g04716 | 125 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 20 | 119 | - | - | |
| Seca9g04716 | 125 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
| Seca9g04716 | 125 | SUPERFAMILY | RNA-binding domain, RBD | 1 | 67 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g04716 | Seca-Chr9 | 131698683 | 131700871 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g04716 | 1 | 64 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 37.500 | 2.08e-08 | 49.3 |