Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04692 ATGGTGATGGTTCCTGCAACATTTCATAAGATCAATAGTATCTGTGGGAGGAGGCAAAACTGGCGTTTGAAAGTTAAGCTGGTTAGGGTATGGAATATGTGTGTAGTTGCCACCCCTAATGATCCATACGCAATGCAGATGGTGTTTGTAGATGAAGAGGGAGGGAAGATAGAGGTTGTAGTCCAGAAGCAGTATATGAAGAAATTTGCACAGTGCCTGGTTGAGGGGGAAGTGTACAGGATAACCAACTTCGGTGTCTCTTCTAATGGAGGCAAGTTTAGGGTTGCTGGGCACGACTACAAGCTGTCGTTTTCAGCATGTATTCAGGTTACTTTGTGTCATGGAGTTTTTATACATGGGTTAGGGCTCTCTCTTGTGAAGACTTCTGCTATCAAGAAAACAAATGGACGTTCGGTCTACCTCGTGGATTTCATGGGAGTTGTAACTATTGTCTCTAAGGAACTTAATATTAACAGGGAGGGAAGGCAGACCCGTCTAATGTTGATAGACTTGGTTGATGAATTTGGGAAGATTCGGTGTGCTGTGTTTGGTGATCTTATTAATGTTTTTATGGAGTTCCTTGCTCTCCCACAACATGGGTTGCCTGTTATGATAATTCAATTCGCAAGGGTTAATCTTTATAAATGGGAGGTTGGCATACAGAATGTCATGAATGCATCAAAGATATTATGGAATCCAGATATTCCTCTGGCAGTGGACTTTAAAAATAGCCTAGTTGTCCATGAAATTAAAACTGATGTTTCTATCTCTACTATCACTGATCGGAGACGAGCACCATCTATGAGGGATGAGTTCCTTAAATTATATCCAAAGAAATCAATTGGTCAACTGTATGATATGGTTGAGGTTGTTCCTTGCTTAACTGAAGGTTTCTTTATAATAATAGCCACCATAAGTGAGATTGTTGAAGACTTCAAGTGGTGGTACATGGCATGTTCCTGTATGAGAGGTGTGTCTTTTGTTGATGGGGTCCATTTCTGTGAAGATTGTAACAGACATGTTTTTTATATGACCCCTAGATACAAGGTGAAGCTGGTGGTGTGTGATGGGAATGATAATGCACATTTCATTCTTTGGGATTTAGACTGCTACTCACTTGTGAATAAAACCCGTCGACAGATGTTGGATGATCTTGAGGTTAACAACTACAACAGTGCTTCATTTGGCTTGTTGTTATTCCAGTCAATCATAAAATGCACTTACTCATCTGCTAATTATTTGTCTAAATTCCTTGCACCTACTCAGGGTCATCCTGTTGGGTTATTCCCAGAAGAAATTATGAACTTGGTTGGCAAGGAGATGCTTTTTCGAATAGAAAGCAGCCAAGAAGATTTACTTACCTTTGAAAACACTTTTAAGATCAAGAAGGTGTGTTGTGATGTGGATATATTGGCTGAATATAAAGACCAAGTTACTGATGAAACTCCTCTAAAGTTGAATTTTGCTCCTGCCTTCACCAAGATACTCGACGCTGATGCAAATGGTGAAGGACTTCAACTTTCCACATGCTGCAAGTCTATTGCAACTGAGCTTGAGATCACTCCTCCATCATGTGTTGCATCTTCCACCAATGGGGAGGAAATTGGGAGCAGTGGTAAAAGGGATATCGAAGAACCAGATGAGGCTCCACTAGAGAGGAAGAAGAGGGGCCAGGGTCAGAGTCGTGAAAGTGGAGAAAAACTGAATGGTGCTTCTGATAGTCTATATGTGAATATAACTTATTTTGTTATCTGTAAATAG 1761 0.4055 MVMVPATFHKINSICGRRQNWRLKVKLVRVWNMCVVATPNDPYAMQMVFVDEEGGKIEVVVQKQYMKKFAQCLVEGEVYRITNFGVSSNGGKFRVAGHDYKLSFSACIQVTLCHGVFIHGLGLSLVKTSAIKKTNGRSVYLVDFMGVVTIVSKELNINREGRQTRLMLIDLVDEFGKIRCAVFGDLINVFMEFLALPQHGLPVMIIQFARVNLYKWEVGIQNVMNASKILWNPDIPLAVDFKNSLVVHEIKTDVSISTITDRRRAPSMRDEFLKLYPKKSIGQLYDMVEVVPCLTEGFFIIIATISEIVEDFKWWYMACSCMRGVSFVDGVHFCEDCNRHVFYMTPRYKVKLVVCDGNDNAHFILWDLDCYSLVNKTRRQMLDDLEVNNYNSASFGLLLFQSIIKCTYSSANYLSKFLAPTQGHPVGLFPEEIMNLVGKEMLFRIESSQEDLLTFENTFKIKKVCCDVDILAEYKDQVTDETPLKLNFAPAFTKILDADANGEGLQLSTCCKSIATELEITPPSCVASSTNGEEIGSSGKRDIEEPDEAPLERKKRGQGQSRESGEKLNGASDSLYVNITYFVICK. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04692 586 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Seca9g04692 586 SUPERFAMILY Nucleic acid-binding proteins 276 387 IPR012340 -
Seca9g04692 586 MobiDBLite consensus disorder prediction 525 568 - -
Seca9g04692 586 SUPERFAMILY Nucleic acid-binding proteins 124 245 IPR012340 -
Seca9g04692 586 Gene3D - 6 113 IPR012340 -
Seca9g04692 586 Gene3D - 279 477 IPR012340 -
Seca9g04692 586 Gene3D - 121 252 IPR012340 -
Seca9g04692 586 MobiDBLite consensus disorder prediction 537 562 - -
Seca9g04692 586 Pfam Domain of unknown function DUF223 47 116 IPR003871 -
Seca9g04692 586 CDD RPA1_DBD_A_like 22 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04692 Seca-Chr9 130550370 130552914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04692 9 365 Core DNA Replication Machinery Family AT5G61000 26.142 3.18e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04692 - - lja:Lj6g3v0884310.1 308.916