Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04685 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGGTTTTGCTTGGATCCGAGTGGCATGGCTCTACCTGGACTCGGCCCCTTCGCCTCCGTCTCCGCCGCCACGGCGGTTTCCGCCTCTAACTCGTTAGAGGACGCCGCCAAGAAGATCCGCAAGCCCTACACTATTACTAAGTCCAGGGAGAACTGGACTGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAAACTGTTATACAGATACGTAGCCATGCGCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGGACAAACGAACATCTTCCTCCACCCAGGCCTAAAAGGAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGCTCCTTTACTCTCACAAGTATCAGGATCTTTTCAATCTTCATCGGCTTTGCTTGAACCTGGATATATCCTGAAGCATGATTCCTCACCAATGCTTAAAACTCCTATTATGAACGCTGTGGTGTCTTCCCGGTCAAACAACACCTTGCAAACAACCAATATATTGCATGTTCCAAAATTGAATAATTCTTGCAGTAGCAGTGAAAGCACTCCTAAAGTGAGGCTGGTTAGTGAATCTAATGGTCAAGGGAATAATAACCATCCATTGAGAGGCAAGGCTTTACTAATTTTCCTTTATAATTTCATGTTGATTTTTTTTAGTTACATTTACATGTATGCACAGCAAGTTCTTCCGGATTTTTCTCAGGTATACGGATTCATTGGCAGTGTATTTGACCCAGATGCAACTGAGCATCTGCAGAGACTAAAACAGATGGACCGAATAGATGTTGAGACGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTCGAGGATCATAGAAAGCTGCTATCATCATCATATGAGATTGAACTGGAGACAAACAACTATATCATTGCAGATAGACCCATGCACGATGAGCAATTGAAGAGTGCTACTTAG 1026 0.4376 MVSKNPNPPEGFCLDPSGMALPGLGPFASVSAATAVSASNSLEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTNEHLPPPRPKRKAAHPYPQKASKNAPLLSQVSGSFQSSSALLEPGYILKHDSSPMLKTPIMNAVVSSRSNNTLQTTNILHVPKLNNSCSSSESTPKVRLVSESNGQGNNNHPLRGKALLIFLYNFMLIFFSYIYMYAQQVLPDFSQVYGFIGSVFDPDATEHLQRLKQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSSYEIELETNNYIIADRPMHDEQLKSAT. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04685 341 CDD SANT 61 104 IPR001005 -
Seca9g04685 341 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Seca9g04685 341 PANTHER SWI/SNF COMPLEX-RELATED 31 301 - -
Seca9g04685 341 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Seca9g04685 341 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Seca9g04685 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Seca9g04685 341 MobiDBLite consensus disorder prediction 108 140 - -
Seca9g04685 341 Gene3D - 61 109 - -
Seca9g04685 341 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Seca9g04685 341 SMART sant 58 106 IPR001005 -
Seca9g04685 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca9g04685 341 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04685 Seca-Chr9 130272798 130282599 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g04685 Myb_DNA-binding 4.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04685 - - gmx:778054 458.759