Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04664 ATGTGCCTTAGGAACTTATTTGCAGCATCTTTGAGGGGAAATAACTCGGGAATGGTTCCATGTTTGGGAGACACTAATTGTCCTAGAATTTGGTACTCTCTCCAGATAAATTGTGGTGGAAAGCTCATAACTTCTAATGAAAGCATGACATATGAAGATGATTCATATGAAACCGGACCTGCAACATCTTACCGGACTGGATCAACCTGGGCAGTTAGCAACACAGGTCACTTCTTTGATAGCGGCCTCAAAGAAGACTACTATACCTGGTCTAATTCAACTAAGCTTGCTATGGACAATGGTGAATTGTATATGGATGCACGTGCTTCTCCCATTTCTCTCACATATTATGGATTTTGCTTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCTGAGATAATGTTCACTAATGATCAAACATATTCCAGCCTTGGAAGGCGTGTATTTGACATATATATTCAGAGGAAGTTAGTGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAAAAGTTCACTGCTACTGTGGCTAGTAATACATTGGAGATCCGCTTTCATTGGGCTGGGAAAGGGACAACTAGTATCCCATTTGGATCGGTATATGGTCCTCTTATATCAGTTATATCTGTTGATCCTGACTTTACACCCCCATTGGAAAATGGAAGAAGCATACATGTGCGATCTATTGTTGCAATTGTAGTTGTTGGAGCACTTGTTATCATCATAGTATTTGGTATAGCTTGGTGGAGAGGATGTCTACGACTGAAAAGTTCATTAGAAAGAGACCTAAGGGGTTTAGATTCACAAACTAGCTTATTTACCTTACGGCAAATCAGAGCAGCAACTAACAACTTTGATACTACCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTTAGATGGCACCGTCATAGCAGTTAAGCAGCTTTCTTCTAAATCAAATCAAGGGAATCGTGAATTTATAAATGAGATTGGAATTATTTCTGCTTTGCAACACCCTTGCCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAGTTGTTGTTGATATATGAATACATGGAAAACAATAGCCTTGCTCGTGCTTTGTTTGGTAATTTTTTTTCTTTGTATTCAAGAAATGAAGCCCGAGAAACAGGTCAATTGATGTTGGATTGGTCAACAAGGAAGAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCCTACCTCCATGGAAAATCAATGTTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTTGATAAAGATCTCAATCCAAAGATATCTGATTTTGGCTTGGCCAAGCTCAAAGAAGAGGGCTATACCCATATAACCACCAGAGTAGCTGGCACTTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTATTTGACTGAGAAAGCAGATCTATATAGTTTTGGAGTCGTTGCCTGGGAAATTGTTAGTGGAAAGAGCAACACCATGAATTGGCCAAAGGAAGAATGCTTCTCTCTTGTTGATTGGGTGCATATCTTGAAAGAAGAAGGTAATATAATGGACCTAGTTGATGAGAGGTTGGGTGATGACTTCAGAAAAGAGGAAGTAATGGTCATGATCAATGTGGCCCTTCTATGCACACAAATTTCTCCAATGCAAAGGCCCACCATGTCCTCAGTGGTAAGCATGCTTGAAGGCAAAACTATTGTTCAAGAGGTGGTGCCTGTAACGTCCTAA 1773 0.4005 MCLRNLFAASLRGNNSGMVPCLGDTNCPRIWYSLQINCGGKLITSNESMTYEDDSYETGPATSYRTGSTWAVSNTGHFFDSGLKEDYYTWSNSTKLAMDNGELYMDARASPISLTYYGFCLGNGNYTVNLHFAEIMFTNDQTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAIIKKFTATVASNTLEIRFHWAGKGTTSIPFGSVYGPLISVISVDPDFTPPLENGRSIHVRSIVAIVVVGALVIIIVFGIAWWRGCLRLKSSLERDLRGLDSQTSLFTLRQIRAATNNFDTTFKIGEGGFGPVYKGVLLDGTVIAVKQLSSKSNQGNREFINEIGIISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFGNFFSLYSRNEARETGQLMLDWSTRKRICVGIARGLAYLHGKSMLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKEEGYTHITTRVAGTYGYMAPEYAMHGYLTEKADLYSFGVVAWEIVSGKSNTMNWPKEECFSLVDWVHILKEEGNIMDLVDERLGDDFRKEEVMVMINVALLCTQISPMQRPTMSSVVSMLEGKTIVQEVVPVTS. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04664 590 Pfam Malectin domain 33 216 IPR021720 -
Seca9g04664 590 ProSiteProfiles Protein kinase domain profile. 294 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04664 590 CDD STKc_IRAK 300 578 - -
Seca9g04664 590 SUPERFAMILY Protein kinase-like (PK-like) 277 578 IPR011009 -
Seca9g04664 590 Gene3D - 32 220 - -
Seca9g04664 590 Pfam Protein tyrosine and serine/threonine kinase 299 575 IPR001245 GO:0004672|GO:0006468
Seca9g04664 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Seca9g04664 590 SMART serkin_6 294 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g04664 590 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 263 369 - -
Seca9g04664 590 Gene3D Phosphorylase Kinase; domain 1 261 369 - -
Seca9g04664 590 FunFam Putative LRR receptor-like serine/threonine-protein kinase 370 587 - -
Seca9g04664 590 Gene3D Transferase(Phosphotransferase) domain 1 370 585 - -
Seca9g04664 590 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 31 222 - -
Seca9g04664 590 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04664 Seca-Chr9 129919714 129925395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04664 19 586 Receptor kinase-like Gene Family AT1G07650 57.118 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g04664 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04664 - - gmx:100786496 926.776