Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g04619 ATGGCTATGGTCCCTTCCCATTTCCATTCCATCAAAAGTGTGTGTGGCATTCGCCAAAACTGGAGGTTGAGAGTTAAATTGGTGAGGGTGTTGAACATGTCTTCTGTTGCTACTCCAAATGACCCCTTTGCTACCCAAATGGTTTTCATTGATGAAGAGGGTGGAAGGATTGAGGCAACGAGTCCGAAGCAACATATGAACAAGTTTTCTCACTTTGTGATTGAGGGACAGATTTATAGGATCACCAATTTTGGAATCATTCGCAACGGTGGAAAGTTCAGCGCAGCTGTTCATGAGTTTAAGCTCATATTCAATGCAACTACGAAGGTTATTCCGTGCCCGAATGTTTCCATCTCATCATCTGGGTTTGCACTTTTGAAAAGTGAGGACATCAAGAAAACCAATGGGCATTCAGAATACCTCTTAGATTTCATGGGCATCGTCACAGCTGTTTCAGAGGAAATCAATATGAACAAGGAGGGCAGAGAGACACGCCTCATGCTCATTGATTTAGTGGATGAGATGGGACAAATTCGCTTGGCATTGTTTGGAGACATGATAGATGTGGTTGCTGGATATCTGTGTCTTCCTCGATCTGGCTTTCCTGTTCTCATCATTCAATTAGCGAAGGTTAGTCTTTACAAAGGGGAAGTTGGCATTCAGAATGTGATGAACGCGTCAAAGGTTTATTGGAACCCGGATATTGCTGAGGCTATAGAGTTCGAGAATGGGTTAGCTGTTCACGAGATAGAAACTGATGTTGATATTCGAACCATTTCTGAAACCAGACGCCCTACCTCAATGAAAGATGATTTCCTTAAATTTTATCCCAAAACGTCTCTAGAAGAACTTCAACAAATGGAAGAGGGTGGGTTCTTTGTTATTCTGGGCAGAATTGAACAAGTAATCCAAGATGGTTTCTGGTGGTACATGGCATGTTCTTGCATGAAATCTGTTTCCTACGATGATGGGGTTCCATTTTGTGATGATTGTGGTTCATATGTGATTGATCTGACTCTTAGGTACAAGCTCAAAATTGAGGTGTCTGATGCAACAGATAATGCTCAACTCATTTTGTTTGACTCTGAGTGTTATGCAATGCTTCACAAATCCTGTCATGACATGTTACTTGAGATTAAGGCTGTAAAATCTTGTGATCACCCATCTGATATCTCCAACTTGGTTGGGAGTGAGTTCCTTTTCCGAGTTGAGCGGAAGGATGATCCTTCATTCACCTATGAGGAATGCTACCGGGTTAAGAGGGTCAGCTCTGATCCAGGTATAATAGTTGAGTATAAAATGGGATTGGATGATGACACTCCTTTGAAGCAAAAATTTGCTCCTCATTTTAGCAAAATTTCTGGTGGAGATGCCATCGATTGTGTCAAGGAATTGTCCCTTCTATATGATTCTGCTATAACTGAGATAGAAATTAGCCCACTAACAACTATCATGTCACCCTGTGATGTCGTTGATGGTGGCATTGTTAACAAGAGAGAGGGAGACCAATCTACCGAGGGACTGTATGAGAGGAAGAAACGTCCTAGGCAGAGATTGATCAAGGTTGAGAAGAATTGA 1578 0.4189 MAMVPSHFHSIKSVCGIRQNWRLRVKLVRVLNMSSVATPNDPFATQMVFIDEEGGRIEATSPKQHMNKFSHFVIEGQIYRITNFGIIRNGGKFSAAVHEFKLIFNATTKVIPCPNVSISSSGFALLKSEDIKKTNGHSEYLLDFMGIVTAVSEEINMNKEGRETRLMLIDLVDEMGQIRLALFGDMIDVVAGYLCLPRSGFPVLIIQLAKVSLYKGEVGIQNVMNASKVYWNPDIAEAIEFENGLAVHEIETDVDIRTISETRRPTSMKDDFLKFYPKTSLEELQQMEEGGFFVILGRIEQVIQDGFWWYMACSCMKSVSYDDGVPFCDDCGSYVIDLTLRYKLKIEVSDATDNAQLILFDSECYAMLHKSCHDMLLEIKAVKSCDHPSDISNLVGSEFLFRVERKDDPSFTYEECYRVKRVSSDPGIIVEYKMGLDDDTPLKQKFAPHFSKISGGDAIDCVKELSLLYDSAITEIEISPLTTIMSPCDVVDGGIVNKREGDQSTEGLYERKKRPRQRLIKVEKN. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g04619 525 CDD RPA1_DBD_B_like 143 241 - -
Seca9g04619 525 Gene3D - 264 426 IPR012340 -
Seca9g04619 525 CDD RPA1_DBD_C 282 439 IPR047192 -
Seca9g04619 525 Gene3D - 6 113 IPR012340 -
Seca9g04619 525 SUPERFAMILY Nucleic acid-binding proteins 126 244 IPR012340 -
Seca9g04619 525 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Seca9g04619 525 SUPERFAMILY Nucleic acid-binding proteins 278 408 IPR012340 -
Seca9g04619 525 CDD RPA1_DBD_A_like 22 110 - -
Seca9g04619 525 Gene3D - 117 251 IPR012340 -
Seca9g04619 525 Pfam Replication factor-A C terminal domain 292 418 IPR013955 -
Seca9g04619 525 Pfam Domain of unknown function DUF223 47 117 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g04619 Seca-Chr9 128234749 128237249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g04619 1 375 Core DNA Replication Machinery Family AT5G08020 23.785 6.14e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g04619 - - lja:Lj6g3v0884310.1 332.028